Bneb014854.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:68978807-68980945[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.4e-05 0.0024 19.6 0.2 1 23 113 135 113 135 0.97 2 18 3.5e-05 0.0019 19.9 0.6 1 23 175 197 175 197 0.98 3 18 0.0011 0.06 15.2 0.4 1 23 203 225 203 225 0.99 4 18 3.5e-05 0.0019 19.9 2.3 1 23 231 253 231 253 0.97 5 18 4.2e-05 0.0023 19.7 1.0 1 23 258 280 258 280 0.98 6 18 9e-07 4.9e-05 24.9 2.2 1 23 286 308 286 308 0.99 7 18 0.00017 0.0092 17.8 0.5 1 23 314 336 314 336 0.99 8 18 0.00066 0.036 15.9 1.0 1 23 342 364 342 364 0.96 9 18 1.1e-05 0.00062 21.5 1.3 1 23 370 392 370 392 0.98 10 18 1e-05 0.00055 21.6 1.9 1 23 398 420 398 420 0.99 11 18 0.00032 0.018 16.9 0.3 1 23 426 448 426 448 0.98 12 18 0.012 0.67 11.9 3.6 1 23 454 476 454 476 0.98 13 18 3.9e-06 0.00021 22.9 3.3 1 23 482 504 482 504 0.99 14 18 8.4e-05 0.0046 18.7 1.1 1 23 510 532 510 532 0.97 15 18 0.0054 0.3 13.0 2.0 1 23 538 560 538 560 0.99 16 18 3.4e-05 0.0019 19.9 1.3 1 23 566 588 566 588 0.99 17 18 0.00028 0.015 17.1 2.3 1 23 594 616 594 616 0.99 18 18 0.0018 0.096 14.6 6.2 1 23 622 644 622 644 0.98
Sequence Information
- Coding Sequence
- ATGGAGGAAGATAAggatattttatcaatttctgaaacaattattgtcaaaactgaAACAGAAAATTTACCAGACATAAAAAACTCGGTAATCAATGAAGTAAAGCAAGAACCGGTTGCGTCTCTGAAcagaaacgaaataaaattaaccGATTCAAAAGAGCCAAGTGATCCattatgttttgaaaaattacccgTCCAAGTTAAAATCGAAACTGATGTTGGTGAAATTAATACTAGCTCTGAAAGTACATCCTCGGAAAAGTCTTACGAACCATTCTCAACAGAATTAGAAAATTTAGACGCTCAGGAAAGTGTTCACACCGGAGAAAAACCTTTTGTGTGTTCAGTGTGTTCAAAGGCATATTCCACTgcgcaaaatttaaaagtacatgaaaacATTCACACCGAAGAAAGATCATACGAGTGTAaaacatttaattgttacaCAAAATTAAAGGAACATGTAAAAGAACACGGTGATTCTAAAAATAGTGTCGAAACTTTGGAAAATTATGAACAGTTTGAATGCGAAGtttgtttaaaaactttttctggTCGAAAAAATTTACTAAGACACGAAAGGATTCATTCGGAAGATAAGGCTTATCAGTGTAGTATTTGTCAAAGAGCATTCCCGTTTGCATCAATCCTAAAAACCCACGAAAGATCTCACACCGGCGAAAAACCGTTCCAGTGTAACGTGTGTTCAAAATCATTTCGATACAATGGCGAGTTAAAAAACCACGAAAAATTTCATACCGAAGAACCGTATCAGTGCCCAAcatgtttgaaaacattttcgGAATCATCGAGTTTAAAAGATCACGAAAAATTGCATGTAGAAGAAAATCTTTTCAAATGCAACATCTGTTCGAAAACGTTTCCGAACCGGATAAACCTGAAACGGCACGAACGAAGGCACACAATAGAAAAACCGTATCAGTGCAACGCATGCGCAAAAACTTTCGCTTTCATTTCAAACCTGAAAATCCACGAACGGACTCACACCGGCGAAAGACCGTTTAAATGTGCCACATGTCCAAAAACGTTCAGATACGTGGCCGAATTGAACACACACGAGAAATTTCACACCCAAGAAAATCCCTTTCAATGCCCCACTTGCCTGAAAACGTTCGCCAAACCGTCCAGTCTGAAAAATCACCGAAAATTGCACaccgaagaaaatattttcaaatgtaaCGTTTGCTCGAAAGCATTCTATAAAGAATCAAACCTGAAAATTCACGAGCGAAAACATACCGGCGAAAAACCGTTCAAATGTGCCGAATGTTCAAGAGCATTCAGATACATAGCCAACTTGAGGGATCACGAAAAAGTCCACACCGGCGAGAAACCGCACCAATGTAAAATATGTCTCAAAACGTTCCTTCGTTCCACTCAATTGACCGATCACGAAAAGAGTCACACcgaagaaaaaccattcaaatgtgacaCATGTTcgaaaacttttaaacaaatgGAAACTCTGAAGCGGCATCAAAGAGTTCATACCGGCGAAAGACCGTTTAAATGTACAGTATGTTCGAAATCGTTCCGATACCTAGGAAGTTTGAAAGAACATGAAAGCGTTCATTCCGAagaaaaaccatatcagtgcGGTACCTGTTTAAAACAATTTGCCATTCTGAGACATTTGAGGAAACACGAACGAATTCATACAGACGAAAAATTCTACAcgtgtaatatatgtttaaaaGGTTTCAATCAGTCGGAGAGTTTAAAGTATCACGAGCGGACGCACACGGGCGAGAGACCTTACGAGTGTGGTGTGTGTTTGAAACGATTTTATAGGGCCACTCACCTGAGGGATCACGAGAAGACGCATACCGGCGAACGGCcgtttaaatgtaatatttgttGTAAGGCGTTTACGCAGAAAGGATGTTTGAGAAAACATGAAAGAGTACATGAGAAAGAATTATTGGAATTAGATGAACTGAACGAttaa
- Protein Sequence
- MEEDKDILSISETIIVKTETENLPDIKNSVINEVKQEPVASLNRNEIKLTDSKEPSDPLCFEKLPVQVKIETDVGEINTSSESTSSEKSYEPFSTELENLDAQESVHTGEKPFVCSVCSKAYSTAQNLKVHENIHTEERSYECKTFNCYTKLKEHVKEHGDSKNSVETLENYEQFECEVCLKTFSGRKNLLRHERIHSEDKAYQCSICQRAFPFASILKTHERSHTGEKPFQCNVCSKSFRYNGELKNHEKFHTEEPYQCPTCLKTFSESSSLKDHEKLHVEENLFKCNICSKTFPNRINLKRHERRHTIEKPYQCNACAKTFAFISNLKIHERTHTGERPFKCATCPKTFRYVAELNTHEKFHTQENPFQCPTCLKTFAKPSSLKNHRKLHTEENIFKCNVCSKAFYKESNLKIHERKHTGEKPFKCAECSRAFRYIANLRDHEKVHTGEKPHQCKICLKTFLRSTQLTDHEKSHTEEKPFKCDTCSKTFKQMETLKRHQRVHTGERPFKCTVCSKSFRYLGSLKEHESVHSEEKPYQCGTCLKQFAILRHLRKHERIHTDEKFYTCNICLKGFNQSESLKYHERTHTGERPYECGVCLKRFYRATHLRDHEKTHTGERPFKCNICCKAFTQKGCLRKHERVHEKELLELDELND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -