Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000004.1:23923319-23938519[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.8e-05 0.00098 20.8 1.3 1 23 428 450 428 450 0.97

2 18 0.3 17 7.5 2.6 1 19 456 474 456 478 0.87

3 18 2.2e-05 0.0012 20.6 0.7 1 23 484 506 484 506 0.99

4 18 0.00012 0.0064 18.3 3.5 1 21 512 532 512 534 0.94

5 18 9.5e-05 0.0051 18.6 4.6 1 23 540 562 540 562 0.99

6 18 9e-05 0.0049 18.6 5.3 1 23 568 590 568 590 0.97

7 18 5.8e-05 0.0031 19.2 7.6 1 23 596 618 596 618 0.97

8 18 3.5e-07 1.9e-05 26.2 2.7 1 23 624 646 624 646 0.98

9 18 0.00026 0.014 17.2 6.7 1 23 652 674 652 674 0.97

10 18 5e-05 0.0027 19.4 5.5 1 23 680 702 680 702 0.97

11 18 1.6e-06 8.5e-05 24.2 3.0 1 23 708 730 708 730 0.98

12 18 2.3e-05 0.0013 20.5 7.9 1 23 736 758 736 758 0.98

13 18 6.1e-05 0.0033 19.1 6.9 1 23 764 786 764 786 0.98

14 18 6.1e-05 0.0033 19.2 7.7 1 23 792 814 792 814 0.98

15 18 3.9e-05 0.0021 19.8 7.1 1 23 820 842 820 842 0.97

16 18 0.00029 0.016 17.0 0.5 1 23 848 870 848 870 0.97

17 18 0.11 6.2 8.9 4.5 1 23 880 902 880 902 0.98

18 18 2.1e-06 0.00012 23.7 1.3 1 23 908 930 908 930 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.8e-05	0.00098	20.8	1.3	1	23	428	450	428	450	0.97
2	18	0.3	17	7.5	2.6	1	19	456	474	456	478	0.87
3	18	2.2e-05	0.0012	20.6	0.7	1	23	484	506	484	506	0.99
4	18	0.00012	0.0064	18.3	3.5	1	21	512	532	512	534	0.94
5	18	9.5e-05	0.0051	18.6	4.6	1	23	540	562	540	562	0.99
6	18	9e-05	0.0049	18.6	5.3	1	23	568	590	568	590	0.97
7	18	5.8e-05	0.0031	19.2	7.6	1	23	596	618	596	618	0.97
8	18	3.5e-07	1.9e-05	26.2	2.7	1	23	624	646	624	646	0.98
9	18	0.00026	0.014	17.2	6.7	1	23	652	674	652	674	0.97
10	18	5e-05	0.0027	19.4	5.5	1	23	680	702	680	702	0.97
11	18	1.6e-06	8.5e-05	24.2	3.0	1	23	708	730	708	730	0.98
12	18	2.3e-05	0.0013	20.5	7.9	1	23	736	758	736	758	0.98
13	18	6.1e-05	0.0033	19.1	6.9	1	23	764	786	764	786	0.98
14	18	6.1e-05	0.0033	19.2	7.7	1	23	792	814	792	814	0.98
15	18	3.9e-05	0.0021	19.8	7.1	1	23	820	842	820	842	0.97
16	18	0.00029	0.016	17.0	0.5	1	23	848	870	848	870	0.97
17	18	0.11	6.2	8.9	4.5	1	23	880	902	880	902	0.98
18	18	2.1e-06	0.00012	23.7	1.3	1	23	908	930	908	930	0.96

Sequence Information

Coding Sequence: ATGAATTCTGGCGAACAGCAAAATTTGATACCGACTTCTGGTGCCCCACCGGTACCAATTACGTCATCTGAGGAGTCGAATCGTGCGAATCAACATCAGGCAGCTACTACAACAGTACCAACTGATTTACGAGTCAACCCGACAGCATTGAATGCAGTTGCTTTATCCAGTGTGGCGAAATATTGGGTTTTAACGAATTTATTGCCTGGACCGATTCCTCAAGTTTCTGTCTATGGTCTCCCGACTACAACACCGAAAATTGAAAATGGGAAATCTGGacagGAGACCATGTTTCAACAACATTCTAGTATATTACCATCCGATCCATTACTTTTACAACATCACAATTCAAATATTGGCGCGAGTGGCATTAATTCCCAAGTTCCGGTCAGTATTTCAACATCACAGGGTGTTGCAAACATTTCAATTCCAACCTCCATGTCACATCTACAAAGCGTAGATAATcaacaacagcaacaacaacaacagaaTGTATCAGGACAACAACACCAGAATGAAAATTCTCATCATAATCCACAGCAAAACTCACAGCAACAAACATCTAATCAACatcagcaacaacaacaacaacaacaacagcagCAGCAACACTCACAACAAATAAGCAACAATAATCATCAACAACATGTAAATACTAATCAAAATAATTCGAATAACTCGCAGAATGTAGTTCAAGTGCAAGATAATCTAGTAAGCGTTATTGAAGAGCAAAAGGATTCAAAAGCGCATTTAGCTCATCTAACGCAAGAGCTAAATCAACAACAGCAGCAGcaacagcaacaacaacaacagcaacatgaAAATCAAATGAATCAACAACAAGGTCTGACGGTGCAACAGCTCCAACAATTAGGTGTACATCAGTTTCAAATTCCTGATATAAAACCAGGACATCATATGATGGACGTTCGAACCGTTGATGGaagtattgttaaaatatcaacAGGTATTCAAGATCAAGAATTGGCGAAAACGTTGGGCGTGGAAATGGTGTCGAATATGTATAAAGTTAATGTTGAAGATATTAATCAGCTGTTGGCTTATCACGAAGTATTCGGTAAATTGCAAAATGAAATCTCACCACCGACGTCAGTCACGCAAAACAATAACACACATATAGTGACGAACACGTCGGTTGCCGGAAATGTGAACATCCAAACGGATTTCAAACcgaatttaaatattgttaaaactgaTCAAGATAACACAAATCCACCAACACCATTAAATACTGAAAATACGCCAGTTGTCAGTGGTACACATGTCTGTGATATATGTGGTAAGATGTTCCCATTTAGATACCAGTTGATAGTTCATAGACGTTATCACATTGAAAGAAAGCCTTTTACCTGTCAAGTCTGCGGTAAAGCGTTTTCGTGTGCCGCCGAATTGACaggccatggaaaatgtcatttAGGTGGCAGCATGTATACGTGTGCTATATGCTTTCACGTGTTCGCTAATGCTGCTTCTCTAGAACGACACATGAAAAGGCATTCTACGGATAAACCGTATGCTTGTACTATTTGTGGTAAATCTTTTGCACGAAAGGAGCATTTAGATAATCATACTAGGTGCCATACAGGAGAGACTCCGTATCGATGTCAGTATTGTGCAAAAACGTTTACTCGAAAAGAGCATATGGTTAATCATGTGCGTAAACATACTGGCGAGACTCCACATCGTTGTGAGATATGTAAGAAATCGTTCACTCGTAAAGAGCACTTTATGAATCACGTCATGTGGCATACCGGCGAAACGCCGCATCATTGTACGCTGTGCGGCAAAAAATACACCCGAAAAGAGCATTTAGCTAACCACATGCGTTCACATACAAATGACACGCCGTTCAGATGCGAAATTTGCGGCAAATCGTTCACGCGAAAGGAACACTTTACGAATCATATTATGTGGCATACCGGAGAGACGCCGCATCGTTGCGACTTCTGTTCAAAAACATTCACACGAAAGGAGCATTTATTGAATCACGTTCGTCAACATACCGGCGAATCACCTCACCGTTGCGGATACTGTTCGAAATCATTTACACGCAAAGAACATTTAGTAAACCACGTACGTCAACATACAGGGGAAACCCCATTCAGATGCACCTACTGTCCAAAAGCATTTACCCGTAAGGATCATCTAGTTAATCATGTCCGGCAACATACCGGCGAATCGCCTCACAAGTGCACGTATTGCACTAAGAGTTTTACACGAAAAGAACATTTGACAAATCATGTTCGACAACATACCGGTGAATCGCCACACAGATGCCAGTTTTGTTCTAAATCGTTTACACGTAAAGAACATTTGACGAACCATGTGAGGATTCACACCGGCGAATCACCACATCGTTGTGAATTCTGTCAGAAGACTTTCACACGAAAAGAACATCTCACTAATCATCTACGACAACATACTGGCGACACACCCCACTGTTGTAATGTATGTTCAAAACCTTTCACGCGAAAAGAGCATCTCATTAATCATATGCGTTCTCACACGGGAGAACGTCCATTCGCCTGCACTGAATGTGGTAAATCATTCCCCTTGAAAGGAAACTTACTATTCCATCAACGGTCTCACAATAAAGGAGCCAACGCCGAACGGCCATTTAGATGCGACTTGTGCCCGAAAGATTTTATGTGCAAAGGGCATTTAGTTTCACATCGACGTTCTCACAGTGGTGAACGTCCTCACGCATGCCCACAGTGTGGCAAAACGTTCGTTGAAAAGGGGAACATGTTGCGTCATATGAGAAAACACAATGTTGACGGCACCGTCCCCACCAATCTAGCAACATCGGTAAACGTTGCCAATCGCATTGTACCCAACGTGCCATCTCAGGTGCAAAACAACCAACAGAACACACAGGTGACCACCGGTTTGCAAATTCCACAAGTGACCCAACCGCAACAAACGTTAGCCCAAATGCCGCAATCATCACAGTCACAACAGACATTGACACAAATGTCACAAGTGACAACACAGTCGCAACAGACACTAGCGGCACAGGTGGCTGCCGCGGCGCAAGTTGCCGCCAATCAAGGTAGCGTTATTTCGCAAACCGTTCCAACGGCTGTTGGCCATATGCAGTTACATCAACAAGGAAATCGACCAGTGGTAGTTCCCACGCCAAATGGGAACGTTTTAGCATCTTACTAA
Protein Sequence: MNSGEQQNLIPTSGAPPVPITSSEESNRANQHQAATTTVPTDLRVNPTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPTTTPKIENGKSGQETMFQQHSSILPSDPLLLQHHNSNIGASGINSQVPVSISTSQGVANISIPTSMSHLQSVDNQQQQQQQQNVSGQQHQNENSHHNPQQNSQQQTSNQHQQQQQQQQQQQQHSQQISNNNHQQHVNTNQNNSNNSQNVVQVQDNLVSVIEEQKDSKAHLAHLTQELNQQQQQQQQQQQQQHENQMNQQQGLTVQQLQQLGVHQFQIPDIKPGHHMMDVRTVDGSIVKISTGIQDQELAKTLGVEMVSNMYKVNVEDINQLLAYHEVFGKLQNEISPPTSVTQNNNTHIVTNTSVAGNVNIQTDFKPNLNIVKTDQDNTNPPTPLNTENTPVVSGTHVCDICGKMFPFRYQLIVHRRYHIERKPFTCQVCGKAFSCAAELTGHGKCHLGGSMYTCAICFHVFANAASLERHMKRHSTDKPYACTICGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTLCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGYCSKSFTRKEHLVNHVRQHTGETPFRCTYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCQFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGDTPHCCNVCSKPFTRKEHLINHMRSHTGERPFACTECGKSFPLKGNLLFHQRSHNKGANAERPFRCDLCPKDFMCKGHLVSHRRSHSGERPHACPQCGKTFVEKGNMLRHMRKHNVDGTVPTNLATSVNVANRIVPNVPSQVQNNQQNTQVTTGLQIPQVTQPQQTLAQMPQSSQSQQTLTQMSQVTTQSQQTLAAQVAAAAQVAANQGSVISQTVPTAVGHMQLHQQGNRPVVVPTPNGNVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -