Bneb013404.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:18485448-18500263[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 8.6e-05 0.0047 18.7 1.3 1 23 239 261 239 261 0.99 2 22 0.00012 0.0068 18.2 5.4 1 23 269 291 269 291 0.98 3 22 0.12 6.5 8.8 0.7 1 23 297 320 297 320 0.89 4 22 0.021 1.1 11.2 4.6 2 23 326 347 325 347 0.97 5 22 0.012 0.68 11.9 0.5 2 23 352 373 352 373 0.96 6 22 2.1e-05 0.0012 20.6 2.7 1 23 378 400 378 401 0.96 7 22 2.8e-06 0.00015 23.4 2.3 2 23 439 461 438 461 0.96 8 22 0.0021 0.12 14.3 1.8 1 23 470 493 470 493 0.97 9 22 0.0009 0.049 15.5 0.9 2 23 500 522 499 522 0.92 10 22 0.0018 0.099 14.5 2.7 1 23 528 550 528 550 0.98 11 22 0.29 16 7.6 0.2 1 11 556 566 556 570 0.86 12 22 1.9e-05 0.001 20.8 0.3 2 23 788 809 787 809 0.97 13 22 1.9e-05 0.001 20.7 0.8 1 23 817 839 817 839 0.99 14 22 0.026 1.4 10.9 0.7 1 23 845 868 845 868 0.94 15 22 0.025 1.4 10.9 2.1 2 23 874 895 873 895 0.97 16 22 2.6e-05 0.0014 20.3 0.3 1 23 900 922 900 922 0.96 17 22 7.3e-06 0.00039 22.1 2.3 1 23 928 951 928 951 0.97 18 22 0.00031 0.017 16.9 1.6 2 23 985 1007 984 1007 0.96 19 22 2.7e-05 0.0015 20.3 0.4 1 23 1016 1039 1016 1039 0.97 20 22 0.0027 0.15 14.0 0.7 2 23 1045 1067 1045 1067 0.90 21 22 9.6e-06 0.00052 21.7 3.0 1 23 1073 1095 1073 1095 0.98 22 22 3e-05 0.0016 20.1 0.3 1 23 1101 1123 1101 1123 0.98
Sequence Information
- Coding Sequence
- ATGGCTGAGACGACGCTCAGTATTGACGATTTTAATTCAGTGTGTCGATTTTGTTTACAGTCAAAAGAAAATATGAGCCCATACACAACACAAATAATACAAATGACTGAGGAATGTACTTCGATACAAGAGCCAGTTAATCTAAAGCTACCGAATCAAATTTGTGATAACTGTTATTGGCaattacaaatttcgtatcaaTTTAAACTACAATATGTACTTTCCGTGGAAATGTTGTGTAATGTTTTTCTGTCGAAAAATTTGGGTAATAAATACTCGgaagaaagtaaaataattatgtcAATACGTGATCAACTTCGTAAAAACCGTAATTGCAGTAAAAAAGCTACTGATGATTCTACAAACGGAATAGACGCAACAAATAATGAATGTGCtgtaaaaactgaaattgaaaTTAATGAGTCGAATTGGAAAGAAGAAATTCCTGACACATCTGTCGTTGCTGCCACAAATGAGACACAACAgGCAATTGAAAATACACCGTACGAGAAcgaaaaagcaaaaaaagaagaaatcgAAACTCTAGATGAAGATGAATCCAATCTATttcaatttgacaatttttgtaACGATTCAGACGATCCGGACTATGATGTGGAAGAAGATGATGGCTTCGAATCAAGTTTaacaaataataagaaaaaacgaaaatcaaaatccaaaattgaaaatatcgcaTATGAAAGTGACGATTTTACATGTAATATTTGTGGTAAAAAACTGAGTACCCGGAAAACACTTTTGGGCCACTTAAAGACGCACACTACAGATcgcaaatttaaatttcattgtgAAGTGTGTAATAAAGGATTCTATCATACCAGCAATCTGAATAGGCATCTGATGCGACATGAAGGTAGAGCCAACTATAAGTGTGATATATGCTCGAAACGGTTCTACGAGTTAAGTATACTGGGGCAACACAACAGGAAAGCACACAAAGCGAAACCCATAAAATGTGACAAATGTTCGTTGCAATTCTATCATCCGTTACATTTGAAACGACACGAACAAACGCACGAACAAAAAAACTCGTGCGATATTTGTGGCAGAATATTCCAGTGGCGTTATCAACTGAAAAATCATCTAGAAAAACATTCAGAAACACGTTACAAATGCAAGTTCTGTGATAAAAGTTTCCAGGAACGACCCAATTTGACCGCACATATTCGACTACACCATAAAGACAAACTGCCAAAACGTCGATACAAACCGGAAGTGTGTTTCATTTGTGGAAAATTAGTCACGTGCGGCCTTTCGAAACATTTAGAAACCCACGACAAAGGTGCCAACAAATGCGAACACTGTGGTAAGGTTTATTCAAGACGTAGTGAACTGGCCAGACACATTAAACAGAAACATACGGATGACCCGAACAGACAACGATACTCGTGCAAAATATGCGATAAATCTTTACTCAATAAGAAAACTTTGGCGAAACACATGAAGTATCAACATTCAGAAGTGCCGAAAATACGTTGCCATCTATGCGAAAAAACCTATAAGACAAAAAAGAATATGGAAATGCATATTGCCGCTGCGCATTTAGATATTCGACCATACTCTTGTACTCTTTGCATGAAAGCGTTTCATACGAAAGCGTTACTGAAGAAACATATGGTTACGCATACACGAGAACGACCGTACCCTTGTACGATTTGCGGGAAAGCGTTTGGATTTCCGGAGGAGCCATTTAACACAAAATTGCCACATCAAATTTGTGATAACTGTTATTGGCAATTACAAAATTCATATCAATTTAAACGACAATACGTACTTTCTGTGGAAAGATTGTGTGATGTACTTTTGTCGtcgaaaaaattgaataataattatgcaGAGGAAAGCAATATAATTGTGTCAATACGTGATAAACTTCGTAAAACCAGTAATTGTGTTAAGAAAGATATCAGTGAGCCGAAAAACGGAATAGAGGCAACAACTAACGAATGTTttataaaaactgaaattgaaaTCAATGAGTTGAATTGTAAAGAAGAAATAGAAGAGgatactgaaaataatttaaattgctACGCGGAAAAATCTAATTATcaagaaaatgcaaaaaaggAAGAAGCTAACACGTCGGATGAAGATGAAAATAATCCAccgtttaacaatttttatgacTCAGACGATCGTGAAGATGACATGGAAAATGATGCCGGCAATGAATCCAGTCTAAGTGATGGCGAAGACAATCAAGAATCAAATACTGATCAAAAATTCTACGACGAAGATGAAACAAATTCAGAGAACGAAAACAAAGAGAGCAGAGATCGAAGACAAAAATCATTGGTggacattttaattaataaatacaaaatttacgaTTTAACATGCAATATTTGTGGCAAAGAATTAAGTACACGAGCCACACTATTGCGACATATGGAGACGCACAGTTCAAATCGTAAATTTCGATATCGGTGTCAAATATGTAATAAGGGATTCTACGATGGCGGCAATCTAAATAAACATCTGAATCGTCATGCGGGCAAAGCcgattataaatgtgaaatcTGTTCGAAGCAATACTACGAACTGAGCGCTCTGGCCgtacacaataaatataaacacaaaGCGAGACCTGTCAAATGTGAGAAATGTTCGATGCAGTTCTACCATCCGTTACAGTTAAAACAACACGGACAAACGCACGAACAAAAAGAGTACATTTGTGACGTTTGCGGCAAAGTGTTCCGAATGAAATACAAATTGAGGGATCATCAAATCGCTCATTCTGAAGTGCGTCCTTACATTTGTACCATCTGCAACAAAGgattcaaacaaaaattcacCTTAAATTCACATATGAAGATGCGCCACGAGGACACAAAACAGCGACAGATGTGTTTCATATGCGGCAAATTGTTCGTTGGCGGTTTGGCGAAACATTTGGAATCGCACGACAAAAATGCCGTTAATAAATGTGAGCGCTGTAATCGCGTGTATACAACACGTAGCGGTTTACGTACTCACATCAAAGAAAAACATACGCATAATCCATGCAAAAAACGTTATATTTGcgaaatatgtaataaaagttTGGGCACAAAAGGCACGCTCACGAAACATATGAAATCTGTCCATTCCGCTGAGCGTGCAAGTTGCCATCTGTGCGGGAAAACGTATAAAACACAAAAGAATGTTGATGCGCATGTCTCAGCGGCACATATGGATATTCGACCATTCACTTGCACCGTTTGTAATAAAGCGTTCCATACGAAAGTGTTGTTGAATAATCATATGCGATCACATACTGGGGAACGGCCATATTCGTGTACGGTTTGTGGTAAGGCGTTTGGATATCGTGAGGTGCTTAAGACACATATGAAAGTTCACAATAAGTAA
- Protein Sequence
- MAETTLSIDDFNSVCRFCLQSKENMSPYTTQIIQMTEECTSIQEPVNLKLPNQICDNCYWQLQISYQFKLQYVLSVEMLCNVFLSKNLGNKYSEESKIIMSIRDQLRKNRNCSKKATDDSTNGIDATNNECAVKTEIEINESNWKEEIPDTSVVAATNETQQAIENTPYENEKAKKEEIETLDEDESNLFQFDNFCNDSDDPDYDVEEDDGFESSLTNNKKKRKSKSKIENIAYESDDFTCNICGKKLSTRKTLLGHLKTHTTDRKFKFHCEVCNKGFYHTSNLNRHLMRHEGRANYKCDICSKRFYELSILGQHNRKAHKAKPIKCDKCSLQFYHPLHLKRHEQTHEQKNSCDICGRIFQWRYQLKNHLEKHSETRYKCKFCDKSFQERPNLTAHIRLHHKDKLPKRRYKPEVCFICGKLVTCGLSKHLETHDKGANKCEHCGKVYSRRSELARHIKQKHTDDPNRQRYSCKICDKSLLNKKTLAKHMKYQHSEVPKIRCHLCEKTYKTKKNMEMHIAAAHLDIRPYSCTLCMKAFHTKALLKKHMVTHTRERPYPCTICGKAFGFPEEPFNTKLPHQICDNCYWQLQNSYQFKRQYVLSVERLCDVLLSSKKLNNNYAEESNIIVSIRDKLRKTSNCVKKDISEPKNGIEATTNECFIKTEIEINELNCKEEIEEDTENNLNCYAEKSNYQENAKKEEANTSDEDENNPPFNNFYDSDDREDDMENDAGNESSLSDGEDNQESNTDQKFYDEDETNSENENKESRDRRQKSLVDILINKYKIYDLTCNICGKELSTRATLLRHMETHSSNRKFRYRCQICNKGFYDGGNLNKHLNRHAGKADYKCEICSKQYYELSALAVHNKYKHKARPVKCEKCSMQFYHPLQLKQHGQTHEQKEYICDVCGKVFRMKYKLRDHQIAHSEVRPYICTICNKGFKQKFTLNSHMKMRHEDTKQRQMCFICGKLFVGGLAKHLESHDKNAVNKCERCNRVYTTRSGLRTHIKEKHTHNPCKKRYICEICNKSLGTKGTLTKHMKSVHSAERASCHLCGKTYKTQKNVDAHVSAAHMDIRPFTCTVCNKAFHTKVLLNNHMRSHTGERPYSCTVCGKAFGYREVLKTHMKVHNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -