Bneb025282.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000008.1:7718260-7719984[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.001 0.057 15.3 0.6 1 20 96 115 96 117 0.94 2 16 0.0013 0.069 15.0 0.3 1 23 124 146 124 146 0.98 3 16 0.00059 0.032 16.1 0.8 1 23 149 171 149 171 0.98 4 16 4.8e-07 2.6e-05 25.8 1.5 1 23 177 199 177 199 0.97 5 16 0.00084 0.046 15.6 2.6 1 23 205 227 205 227 0.97 6 16 0.0051 0.28 13.1 1.9 1 23 233 255 233 255 0.99 7 16 2.3e-05 0.0013 20.5 3.3 1 23 261 283 261 283 0.99 8 16 1.5e-07 8.4e-06 27.3 4.1 1 23 289 311 289 311 0.99 9 16 3.4e-06 0.00018 23.1 1.9 1 23 317 339 317 339 0.97 10 16 0.00057 0.031 16.1 6.2 1 23 345 367 345 367 0.99 11 16 6.6e-05 0.0036 19.0 4.8 2 23 375 396 374 396 0.98 12 16 1.8e-06 9.8e-05 24.0 2.1 1 23 402 424 402 424 0.99 13 16 6.5e-07 3.6e-05 25.4 1.1 1 23 430 452 430 452 0.99 14 16 5e-07 2.7e-05 25.7 3.1 1 23 458 480 458 480 0.99 15 16 8.5e-06 0.00046 21.9 0.3 1 23 486 508 486 508 0.98 16 16 7.1e-07 3.9e-05 25.2 1.0 1 23 514 536 514 536 0.98
Sequence Information
- Coding Sequence
- ATGGAGAAACCAACTCATGAAATTGATCATATAATCGAAATGGtcgaaattaaagtggagaaagatgaagtaACAGAGACAGAAACTATTGAACCAAGTAGTATAAACGATTTTCCAAACTCATCGgagcaaaatattaaaatgGAACCAGATGACTTTGAATATGTGAACGTAAAAATGGAAAGTTCCAGTTCAAATTTTGTCGAGAATGAAAGCTATTTTACAGAACTGGACGGTTTAAATACGGACGTTAAAATCGAACCGGGCGAAATTGACAAAGACCAACATAAATGTGATggttgtttaaaaatattcaatcacGCCGAAGAtttacaaaaacataaaattgtGTGTGTGGACGAAAGGCCCTTTCgatgtaaaatatgttccagAACATTCGCCTTTTTAGAACCGCTCGAAATACATGAACGATTACACAAAACATACAAATGTAAATtatgtttgaaaacatttaGTAGCTCGGGTGTTCTCGGACGACACGAACGACTTCATAGcggtgaaaaaaaattcaaatgcaCGACATGTTCGAAATCGTTTAGTCAGGCGAGTAATTTAAAACGCCACGAAATCATTCACACCGGTGAAAAACCGTTTAAGTGCAGTATATGTGCGAAAACGTTCAATCTAAAACACAGTTTAATAAATCATGAAAAACTTCACAGTGACGAACGACCCTATAAATGTGACGTGTGTTCGAAAACGttcgtttttttaaatttaaaaaagttacatGAACGCactcatagtggtgaaaaaccatataagtgTAATCAGTGTTCGAAAAAATTCTCATTTTTAAGCGGTTTAAAAACGCACGAAAGaactcacagtggtgaaaaaccatataaatgtaaaatatgttcgaaaacatttagtGATTCGAGTCATTTGATACGACATAAACGAATTCACAGTGGCGAACGCGCGTATAAATGTAACGtgtgttcgaaaacatttacgcAAAACGAAACATTAAAACGACATGAAACAATTCACAGTGTTGAAAAATTCTATAAATGTGATATGTGCGCGAAAACATTTAATCATTACGGTCATTTTCGAACACATCAAATAACACACTGTAACGAACAAAAACCAaataaatgtgatatatgtaatcaaacgtttaaatataaatgtaatttaaaaaaacatgaacgaattcacagtggtgaaaaaccgtttAAATGTGACACATGCGCACAAACATTCACACAATCGAGTAGCTTAACTAAACATCAACGAATACATAGCGGTGAAAAACCGTACGAATGTACGGtgtgttcgaaaacatttattCAATCGAGTGGTTTACGAAAACATGAACGCACGCATagcggtgaaaaaccgtataagtgtgatgtgtgcgcgaaaacgtttaatcataaagaaaatttgaatcgaCATCAAcgaattcatagtggtgaaaaaccgtttCAGTGTAATGtgtgcgcgaaaacgtttaatCAATCGAACGCGTTAAAGGCGCACGCaagaattcatagtggtgtGAAACCGTACGAATGTAATATGTGTACGAAAACGTTTGCTACTTCCGGTCAGCTGAAAAAGCACGAAAGGGTACACGGTGGTGATGGTGGTGATAATATAAACGTGGTGTATAGTATGCCCTAA
- Protein Sequence
- MEKPTHEIDHIIEMVEIKVEKDEVTETETIEPSSINDFPNSSEQNIKMEPDDFEYVNVKMESSSSNFVENESYFTELDGLNTDVKIEPGEIDKDQHKCDGCLKIFNHAEDLQKHKIVCVDERPFRCKICSRTFAFLEPLEIHERLHKTYKCKLCLKTFSSSGVLGRHERLHSGEKKFKCTTCSKSFSQASNLKRHEIIHTGEKPFKCSICAKTFNLKHSLINHEKLHSDERPYKCDVCSKTFVFLNLKKLHERTHSGEKPYKCNQCSKKFSFLSGLKTHERTHSGEKPYKCKICSKTFSDSSHLIRHKRIHSGERAYKCNVCSKTFTQNETLKRHETIHSVEKFYKCDMCAKTFNHYGHFRTHQITHCNEQKPNKCDICNQTFKYKCNLKKHERIHSGEKPFKCDTCAQTFTQSSSLTKHQRIHSGEKPYECTVCSKTFIQSSGLRKHERTHSGEKPYKCDVCAKTFNHKENLNRHQRIHSGEKPFQCNVCAKTFNQSNALKAHARIHSGVKPYECNMCTKTFATSGQLKKHERVHGGDGGDNINVVYSMP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -