Bneb014800.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000003.1:67903480-67915406[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00012 0.0064 18.3 0.4 2 23 379 400 378 400 0.96 2 23 1.1e-05 0.00062 21.4 2.2 1 23 408 430 408 430 0.98 3 23 0.0099 0.54 12.2 0.2 2 23 437 459 436 459 0.96 4 23 0.017 0.93 11.5 1.9 2 23 465 486 464 486 0.97 5 23 0.00033 0.018 16.8 0.9 2 23 492 513 491 513 0.96 6 23 0.0028 0.15 13.9 6.3 1 23 519 542 519 542 0.94 7 23 0.055 3 9.9 1.2 3 23 577 598 575 598 0.89 8 23 0.00024 0.013 17.3 0.6 1 23 607 630 607 630 0.97 9 23 0.00099 0.054 15.3 0.7 2 23 637 659 636 659 0.96 10 23 0.0002 0.011 17.5 5.7 1 23 665 687 665 687 0.97 11 23 0.00019 0.011 17.6 0.6 1 22 693 714 693 714 0.96 12 23 0.00019 0.011 17.6 0.5 2 23 989 1010 988 1010 0.96 13 23 0.00022 0.012 17.4 0.9 1 23 1018 1040 1018 1040 0.98 14 23 0.00061 0.033 16.0 0.2 1 23 1046 1069 1046 1069 0.96 15 23 0.0077 0.42 12.5 1.6 3 23 1076 1097 1074 1097 0.96 16 23 4.9e-06 0.00027 22.6 0.5 1 23 1102 1124 1102 1124 0.98 17 23 0.00076 0.041 15.7 7.4 1 23 1130 1153 1130 1153 0.95 18 23 3.3 1.8e+02 4.3 0.2 3 23 1162 1181 1161 1181 0.92 19 23 0.00027 0.015 17.1 5.0 1 23 1186 1209 1186 1209 0.96 20 23 0.00015 0.0081 17.9 0.2 2 23 1219 1241 1218 1241 0.96 21 23 0.00023 0.013 17.3 0.6 2 23 1248 1270 1248 1270 0.96 22 23 0.00014 0.0076 18.0 6.0 1 23 1276 1298 1276 1298 0.96 23 23 1.5e-05 0.00082 21.1 0.5 1 23 1304 1326 1304 1326 0.98
Sequence Information
- Coding Sequence
- ATGCAATTACTGTCTACGTCATCGACCGAATTCGAATTTACGACACGGAATAGTTCAACACGAATTAACTCAAGACACCTGATATACAAAAACCGGaaatatatattcatatttaaattagtTGAATTGGCGTTAATAGCAGTGAGTTTGACCTTATTCCTCCTTGGAAATGATCTCGTTGAGAAACAGATTCATTTAGCTATGAATTACGTGACTCATGGTGCAGTTTTCACATTTGCACTTATAACTTTAATCAACCCAACATTCGGTTCGTCTACAACCATGATATCGTTAAATTTGATGGCTACACTCTCACTACTGACAATTGGAGCGATGTCAGTGGCGAATTGGTGGCAAATTCAACAGCACATTGCATTGCCGAGCATTAAGATGAAAATTGATGCGAATAGTATGGCCGATATTGAAATTTCTAGTGAATTAAAAGCTTTTTCTGGAATGTTTTGTATTTTCTtttCACGGCCGAAATTCGTTatgttcgaaaaattaactgtcGACGATTTTGATCACATTTGTCGTgtttgtttatatacaaaagataaCATGTTAAAAATGTCAACGCGACAGATTGTGTTCATGTTAGAGGAGTGTACTTCTGCTCAAgaGCCGAAAGGTATCCGATTTCCTAAACAAATATGTCAGAACTGTTACTATCAGCTAAAAACCGCGTACGATTTTAAACAACAATGTgattcttcaaaaaaaattttatgttcaaTATCCGAAAAACAATCAAGGGTAAATTCtgaaattgaagaaaatgaaaaagTGAAACAAGAATCAATTTTCGACTCGGTCAATGCCGAATTTAATGATGATAATACAAAGGaagatacaaaattaaaattagaagaaacaGAATTTcttgaaatcaaagaaaattcgCAAAATAGTGACataaaatcagtaaaatcaGACAATGAATCTGAATATGATGAGAAAAATGATGAATTCAACAACGAAAGTTGTTCAAGTGACGAAGAATCAAAAGACGAGACCGAAGAAACCCGAGAAAAAGCCGAGTCATCGGACGACAACGAAAATCACGAAGGCTACGAACGCAAACAACGATCTCTAGCCGacattctattaaaaaaatacaaaatttacggCCTAACATGTAACATTTGTAATAAAGAGATCAGTACCCGTTCCACGCTCCTCCGACACATGGAAATTCATGACAAGAATCGTTcactaaaatataaatgtcacatttgcaacaaaggattctatgCGCaggaaaatttaaagaaacacaTCGCTCGCCACGAAGGCAGGACCAAGTTACAGTGTGACTTGTGCCCTAAACGATTTTACGTCCTGAGCGCCCTAGGAGTTCATTATAAATCTAGCCACAAAGTGAACCCGCAGAAATGTAGCCGATGCCCGCAAGAGTTCTATCATCCGTTACAGCTGCAGCAACACGAACAAACGCACGACGAGAAAAAACTGATTTGCGACGTGTGCGGGAAAATATTCCCGAAGCGAAACAAATTGACGCGACACAAGAAAAATCACACCCAAGACCGACCCCACCACTGTACCGTgtgcaacaaaaatttcaaatccaAGGGTAGTTTACAAACGCACACGAAACTACGCCACGAAGAAACCGACCGACGAGAAATGTGCTACATCTGCGGAAAATTAATGCCCGTGGGAACGTTCACCGTACACCTAGAAACGCACAAGGACCGTAGCGTCATCTGTCCCCACTGTAACAAAATCTTCGCCAATAAAATCATCCTGGAACGACACGTCTATCACAAACACACCAACGATGGTTCCACCACCAAattctactgtaaaatttgCAATAAAGCACTCGGCAGCAAAGGTACACTCTCGACTCACATGAGAGTTACACATTCGGAGGCGAAAAAGATCGAATGTCACATTTGTGGTAAAGCGTACAAGTTGGTTTCGCACGTTAACGTGCATATCAAGAGTGCACATATGGACATTCGACCGCATATTTGTCAGACGTGTTTCAAAGCGTTTCACAGTAAATCGGAATTGAATAATCATATGCGAACGCACACCGGTGAACGCCCTTTTCCGTGTCACATTTGCGGAAAGGCGTTCGGATTTAAAACTGTACTTAAAACACATATGAAAaCATTAATAGCAGTGAGTTTGGCGTCACTCTTCCTTGGAAATGATCTGGTCGAGAAACAAATTCATTTAGCTATGATTTACGTTATTCATGGCGCAATTTTTACATTTGCGCTCATAACTTTAATCAACCCAATATTCGGTTCGTCTACAACCATGatattGTTAAATTCGATCGCTACATTCTCGCTATTGACAATTGGAACGATATCAATGGCGTATTGGTGGAAAATTCAAGAGCCCATTGCATTATCGAATACTAAGATGAAAACTAATATTGAAATTTCCAATGAACTAAAAGCTTTTTCTGGAATGTTTTGTATTTTCTGTGGTCTGTTACATATGACTgagtcaattttaattaaagtctGGAATGATGCAACAAGTAATGTTGCTTCAGAgtcaatttatgaaaaattgccCCAACAAATTTGTAATTCTTGTCTTGGACAGTTAAAAAATGCATTCCAGTTCAAACAACAATGTGTGTTATCTTTTGAAATactctgtaaaattgttttaaacgaACAAAATCACTTTAACGAAAGCAATGAACGAAAAGTGGACAGGTCCGGAATCATTCTAGAACAGAATCAGAGCGATGAGAATTCGGGGAACGAAATTAACGAgtcaaatcaaataaaaacCGAATATTGTGACGATAGCGACCTTGAATCCGATTCAGATCATGATAATGAGAACAATTTTGAGTCAAATGATAATCTACACGATAATAGCAAATTACAGACGCTTCACcctaatttatttgaaaaacgcCAAAAATCATTAACAGATATCCTTCgtaaaaaatatgatatataCGATCTCACATGTAATATTTGTAACAAAGAATTAAGCACCCGATTCACACTAATCCGTCACATGGAAATCCACAATCAAAACCGTAAATTGAAGTATCGATGTCGAATATGTAACAAAGGTTTCTACGCGGCGGAAAATCTACGAAAACATGAAAATCGACACATGGGAAAAACGAAATATCAATGCGAGGAATGTCCAAAGCGATTTTATGTATTAAGTGCATTGGCGGTGCACAGTAAATCTAGTCATAAAGCTAAACCAATCAACTGTGATAAATGTAACCTTCAATTTTACCATAGATTACAGTTAGAGCGCCACCAAGAGACGGCGCATGCGCGAAAAGAATACGTTTGTGACGTGTGCGGGAAAACCTTTACCATACAGTATTACTTACGGGAACATCAGATAACACATTCCGACACTAGATTTCACCactgtaaaatttgtaataaaggTTTTAAACACAAAGGCACCCTAAATTCGCACATGAAACTACAACATATATATCCAGAACGTCGGGAAATGTGCAATGTTTGCGGGAAATTAATCTTACCATCAACCCTACGCTCCCATCTCGAGTCCCACGATCAAAACACACATAAATGTTCGCACTGTGGAAAAATATACACTAATAAATACGTGCTACGGAAACATATAAACGAAAAACATACTTTCGATTCCGGTGCCATATCGATTACATGCGAAATATGTAATAAAGTTCTGGCAAACAAACGAACTCTCAAAGTTCACATGAATATCATGCATTCGGACGTGAAGAGACGCGAATGCCATATTTGTGGGAAGGCGTATAAATTACAATCGAACGTGAGTGCGCATATTCAGAGCACGCATATGGACGTAAGACCGCACGCGTGTACCACATGTAACAAAGCGTTTCATACGAAAACGCTATTACGTAATCATATGCGAACACATACGGGCGAGCGGCCATTTTCGTGTAATATTTGCGGTAAATCGTTTGGATTTAAAGGGGTGTTAAATACGCATATGAAAGTTCATacgaagtaa
- Protein Sequence
- MQLLSTSSTEFEFTTRNSSTRINSRHLIYKNRKYIFIFKLVELALIAVSLTLFLLGNDLVEKQIHLAMNYVTHGAVFTFALITLINPTFGSSTTMISLNLMATLSLLTIGAMSVANWWQIQQHIALPSIKMKIDANSMADIEISSELKAFSGMFCIFFSRPKFVMFEKLTVDDFDHICRVCLYTKDNMLKMSTRQIVFMLEECTSAQEPKGIRFPKQICQNCYYQLKTAYDFKQQCDSSKKILCSISEKQSRVNSEIEENEKVKQESIFDSVNAEFNDDNTKEDTKLKLEETEFLEIKENSQNSDIKSVKSDNESEYDEKNDEFNNESCSSDEESKDETEETREKAESSDDNENHEGYERKQRSLADILLKKYKIYGLTCNICNKEISTRSTLLRHMEIHDKNRSLKYKCHICNKGFYAQENLKKHIARHEGRTKLQCDLCPKRFYVLSALGVHYKSSHKVNPQKCSRCPQEFYHPLQLQQHEQTHDEKKLICDVCGKIFPKRNKLTRHKKNHTQDRPHHCTVCNKNFKSKGSLQTHTKLRHEETDRREMCYICGKLMPVGTFTVHLETHKDRSVICPHCNKIFANKIILERHVYHKHTNDGSTTKFYCKICNKALGSKGTLSTHMRVTHSEAKKIECHICGKAYKLVSHVNVHIKSAHMDIRPHICQTCFKAFHSKSELNNHMRTHTGERPFPCHICGKAFGFKTVLKTHMKTLIAVSLASLFLGNDLVEKQIHLAMIYVIHGAIFTFALITLINPIFGSSTTMILLNSIATFSLLTIGTISMAYWWKIQEPIALSNTKMKTNIEISNELKAFSGMFCIFCGLLHMTESILIKVWNDATSNVASESIYEKLPQQICNSCLGQLKNAFQFKQQCVLSFEILCKIVLNEQNHFNESNERKVDRSGIILEQNQSDENSGNEINESNQIKTEYCDDSDLESDSDHDNENNFESNDNLHDNSKLQTLHPNLFEKRQKSLTDILRKKYDIYDLTCNICNKELSTRFTLIRHMEIHNQNRKLKYRCRICNKGFYAAENLRKHENRHMGKTKYQCEECPKRFYVLSALAVHSKSSHKAKPINCDKCNLQFYHRLQLERHQETAHARKEYVCDVCGKTFTIQYYLREHQITHSDTRFHHCKICNKGFKHKGTLNSHMKLQHIYPERREMCNVCGKLILPSTLRSHLESHDQNTHKCSHCGKIYTNKYVLRKHINEKHTFDSGAISITCEICNKVLANKRTLKVHMNIMHSDVKRRECHICGKAYKLQSNVSAHIQSTHMDVRPHACTTCNKAFHTKTLLRNHMRTHTGERPFSCNICGKSFGFKGVLNTHMKVHTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -