Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000003.1:23648551-23650381[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.7e-07 2e-05 26.1 0.7 1 23 196 218 196 218 0.96

2 14 8.3e-05 0.0045 18.7 2.5 1 23 224 246 224 246 0.98

3 14 3e-07 1.6e-05 26.4 2.7 1 23 252 274 252 274 0.98

4 14 0.00018 0.0099 17.7 0.3 1 23 280 302 280 302 0.98

5 14 3.3e-06 0.00018 23.1 0.7 1 23 308 330 308 330 0.99

6 14 1.2e-06 6.6e-05 24.5 1.4 1 23 336 358 336 358 0.99

7 14 1.2e-07 6.8e-06 27.6 0.9 1 23 364 386 364 386 0.96

8 14 1.4e-05 0.00076 21.2 0.7 1 23 392 414 392 414 0.99

9 14 1.7e-07 9e-06 27.2 0.6 1 23 420 443 420 443 0.98

10 14 1.1e-05 0.00062 21.5 1.1 1 23 452 474 452 474 0.97

11 14 2.6e-08 1.4e-06 29.8 0.4 1 23 480 502 480 502 0.99

12 14 1.2e-06 6.8e-05 24.5 0.3 1 23 508 530 508 530 0.99

13 14 1.7e-05 0.00092 20.9 2.3 1 23 536 558 536 558 0.99

14 14 0.00014 0.0075 18.0 1.1 1 23 564 588 564 588 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.7e-07	2e-05	26.1	0.7	1	23	196	218	196	218	0.96
2	14	8.3e-05	0.0045	18.7	2.5	1	23	224	246	224	246	0.98
3	14	3e-07	1.6e-05	26.4	2.7	1	23	252	274	252	274	0.98
4	14	0.00018	0.0099	17.7	0.3	1	23	280	302	280	302	0.98
5	14	3.3e-06	0.00018	23.1	0.7	1	23	308	330	308	330	0.99
6	14	1.2e-06	6.6e-05	24.5	1.4	1	23	336	358	336	358	0.99
7	14	1.2e-07	6.8e-06	27.6	0.9	1	23	364	386	364	386	0.96
8	14	1.4e-05	0.00076	21.2	0.7	1	23	392	414	392	414	0.99
9	14	1.7e-07	9e-06	27.2	0.6	1	23	420	443	420	443	0.98
10	14	1.1e-05	0.00062	21.5	1.1	1	23	452	474	452	474	0.97
11	14	2.6e-08	1.4e-06	29.8	0.4	1	23	480	502	480	502	0.99
12	14	1.2e-06	6.8e-05	24.5	0.3	1	23	508	530	508	530	0.99
13	14	1.7e-05	0.00092	20.9	2.3	1	23	536	558	536	558	0.99
14	14	0.00014	0.0075	18.0	1.1	1	23	564	588	564	588	0.91

Sequence Information

Coding Sequence: ATGGCATGTGCCTCTGTCCataTTGAAAAAGACGATAATTTACCGAAAAATATTTGTGATGAGTGTCTTTATCTCGTTAAAAATGCatataagtttaaaataaaGTGTGAAGAGAGCGATAAATTTTTACGGCAACATTACCAAGaatatgtttcaaataaaatttgtattgagACAAATGCTAAATTTGGAAATAATGAAAGTATAacattatctgaattttatgaGGATGATATACAGAATATCGATTACAACTGTCTAGAAAATTCAGCGAATAGTCCAATTGAAACTTTAttagaaaatgttgaaaatataaaatttgcatCAAATGAATTAGTATCACAAGATTTAAAGACTATAGACGATGATAATGAAAATGAAGTTATTGAAAATGAAGATTTTTGTAGGGAGGAAAAttctgaaaaagaaaatttattttttcttgaagaaaatgaaaataacataAAAGATTATTTAGATACTGATAATATTGACCACGAAGAAGATGTCGTATGTGAAACTATTGAAGAAACTCTagaatttgaaacaaaaaaggaaaatgaaGATAGTAGTAAAGAAAAATCCTTCCTTTGCAACGAATGTGGCACAGAATTCAAACGATCTGCCGACTTAAAACGACACATGTTAACTCATTCCGGAGAAACACCATACATCTGCCTGATATGTCAAAAaggttttaaacaaaaatttcatctGTCCGAACATGTACGATCACACGAACGCAAAGAATATTTCGTTTGTAATATTTGTCAAAAGAAATTCACACGTTACGGTACATTAAGAACACACATGCGCACTCACACAAAATTAAAACCGTACGAATGCGCCATCTGTCAAAAACGTTTCACCGGTTCagacattttaaataaacatctgCGCATACACACCGGggaaaaaccgtataaatgtgATCAATGTCCACGTGCGTTTGCGCATATCGATCAACTTCAGATACATTTACGAACACATACTGGcgaaaaaccgtataaatgtTCAAAATGTGATAAAGCTTTCACGCAGTATAATGGTCTGAATGTTCATATGATGAAACACACCGGGGAAAAACCGTATTTGTGTAGCGAATGTGGAAAACGTTTCGTGCGTTCCGATGATTTGAAAAAACATGTACGAACACACACGAAAGAACGGCCGTACGTGTGTAGTGTGTGTTCACGAGGATTCATCCAATCATTTCATCTCGCCGAGCACATGCGCATACACGATGGCGCGAAACCGTTCAGTTGTGAAATTTGTGGTAAAGATTTTCGACGTAATGGAACTCTGAAAATTCATATCCGAACTCAACATACCGAGAGCGATTCCCGTAAATTATTTCCGTGTaatttatgcaataaaaaatttactgttCTATATTCACTAAATAAACATATGTTATTGCATACGGGTGAACGGCCTTACGTTTGTACCGTGTGCGGTAAAAGTTTTGTACAAGCAGTACATTTAGAAATTCATATGCGGACTCATTCCGGGGAACGTCCGTATGTTTGTAATACGTGCGGTAAAGGGTTTGGATCATCGTCACGACTGACGGTACATATACGAACGCACACCGGGGAACGACCGTACAAGTGTACACTTTGCAGTCGAGCGTGTACAACATCCACAGCGCTTAAAGTACATATGCGAATTCATACCGGTGAAATGCCCTACTCGTGTCAGAAGTGTAATAAACTTTTTAGCAGGTCAGATTTATTATTGGCGCATCGAAAAAGTAATGGACATTAA
Protein Sequence: MACASVHIEKDDNLPKNICDECLYLVKNAYKFKIKCEESDKFLRQHYQEYVSNKICIETNAKFGNNESITLSEFYEDDIQNIDYNCLENSANSPIETLLENVENIKFASNELVSQDLKTIDDDNENEVIENEDFCREENSEKENLFFLEENENNIKDYLDTDNIDHEEDVVCETIEETLEFETKKENEDSSKEKSFLCNECGTEFKRSADLKRHMLTHSGETPYICLICQKGFKQKFHLSEHVRSHERKEYFVCNICQKKFTRYGTLRTHMRTHTKLKPYECAICQKRFTGSDILNKHLRIHTGEKPYKCDQCPRAFAHIDQLQIHLRTHTGEKPYKCSKCDKAFTQYNGLNVHMMKHTGEKPYLCSECGKRFVRSDDLKKHVRTHTKERPYVCSVCSRGFIQSFHLAEHMRIHDGAKPFSCEICGKDFRRNGTLKIHIRTQHTESDSRKLFPCNLCNKKFTVLYSLNKHMLLHTGERPYVCTVCGKSFVQAVHLEIHMRTHSGERPYVCNTCGKGFGSSSRLTVHIRTHTGERPYKCTLCSRACTTSTALKVHMRIHTGEMPYSCQKCNKLFSRSDLLLAHRKSNGH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -