Bneb039252.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000030.1:1198601-1203141[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00022 0.012 17.4 4.6 2 23 149 171 148 171 0.96 2 20 5e-05 0.0027 19.4 0.4 2 23 177 198 176 198 0.97 3 20 1.1e-06 6.1e-05 24.6 1.3 1 23 204 226 204 226 0.98 4 20 0.00037 0.02 16.7 1.0 1 23 232 254 232 254 0.98 5 20 2.8e-05 0.0015 20.2 3.7 1 23 260 282 260 282 0.99 6 20 9.6e-06 0.00053 21.7 0.4 1 23 288 310 288 310 0.98 7 20 0.00018 0.0095 17.7 2.6 1 21 316 336 316 337 0.93 8 20 0.0033 0.18 13.7 1.0 2 23 362 383 362 383 0.96 9 20 3.1e-07 1.7e-05 26.4 1.9 1 23 389 411 389 411 0.98 10 20 8.5e-06 0.00047 21.8 1.5 1 23 417 439 417 439 0.98 11 20 0.00012 0.0067 18.2 1.6 1 23 445 467 445 467 0.97 12 20 0.0039 0.21 13.5 3.2 3 23 475 495 473 495 0.96 13 20 0.0046 0.25 13.3 0.2 1 23 501 523 501 523 0.95 14 20 2.4e-05 0.0013 20.4 5.9 1 23 529 551 529 551 0.98 15 20 0.037 2 10.4 5.3 1 23 558 581 558 581 0.95 16 20 0.00012 0.0065 18.2 1.1 2 23 591 612 590 612 0.96 17 20 5.6e-06 0.0003 22.4 1.3 1 23 618 640 618 640 0.98 18 20 0.00035 0.019 16.8 2.8 1 23 646 668 646 668 0.98 19 20 6.8e-05 0.0037 19.0 0.7 2 23 675 696 674 696 0.97 20 20 0.00057 0.031 16.1 2.6 1 23 702 725 702 725 0.97
Sequence Information
- Coding Sequence
- ATGGACGATTTTGCTGATGAATCTTCAGATAAAGAGgttaaaattgaagaaaaatttggaaaagatCTATCTTCCGTAAACTGTGTATTTCTTTCAACGAAGCCACAAGTAAATTCAACCAAATTCTTTCAAGAAAGTAATGaattgcaaaatataaaaaaagaatatcttACTGATTCCGAAGAAGGAAATGTTAAATTGgaaCCTATTGAAAACGAATCTCATGAATCAACTGAATTTTCACAAGAAAATGCGAGATTGAGAAATATAAAAGATGAGTGCCTTACTGATTCtgaggagaataatgaaatcgaaaattcgaattattttacatccataaataatttacattcggaaataaaaattgaaccAAGTGAAGGGAATGAGAACTGTGACGAGAATTCCGCTGACTCGGTGCAAATCGTCCAAACCGTAGACGAGCTCAAATGTAATTggtgttcaaaaacatttagttTCTTGAGCAATTTAAAACACCATGAAAAGAAGACACACGACACCAAATCAACGCAGTGTGACATCTGCCTTAAAACGTTCGCCCGTTGGGCAACACTACGGGTGCACAAACGTTTACACACCGGCGAACAACTATACAAGTGTGAATTGTgcccaaaaaaatttacacaatcAAGCGGCTTAAAGCAACATCAATTGTCGCACGCGGGAATAAAACCGTATCAGTGTGACACGTGCTCTAAAACTTTTACCGCGCTAAACAGTTTAAAAGAACATGAACGACTTCATACTGGCGATGGACTCTTTCGATGCGACACATGCTTCAAAACATTCACCCGACCGAAATTCTTAGAAACGCACCAAAGATCGCACACCGGCGAAAAACCGTTTCAGTGCCCGACTTGTTCCCGTACATTCGTTACCGCGCAAACTCTAAAGGCGCACGAAAGAATTCACACTGGCGAGAGACCGTTTCACTGTACCACGTGTCCGAAAGCGTTTATTACTTCCAGCAATCTACACAAACACGAAAAACGTTGCGTCAGCGACCGAAAAAAATGTTCGGTCTCAAATGAATTCCGGGAGTCCCACAAGGGGATGACACAGGCCCAGTGTGATATATGTTTCAAAACTTTCTCGagttttttaaacttaaatttaCATAAAGATATCCACACGGGCGAAAAACGATTTCAGTGCACCAAGTGCTCGAAATCGTTTATCAATTCAGGCAATTTACGCCGCCACCAAAACATACATACCGGCGAAAAACTCTTCAAATGTGACACATGTTCGAAAACGTTCACGCAAGCCACCAGTCTAAAGGAACACGAAAGAATTCACACCGGCGAAAATCTTTTTGCGTGTAAAATCTGTTCAAAAACGTTTACTCGCGCCACCTTCGTAAAAAAACACGAACGAATCCACGAATGGAAAAAAAGCATTGCCTGTCACACATGTCAACAACTGTTCACCACTCACGCGGAACTGAAACGCCATCAAACCGTTCACACCGGAAAAACTCTCTATCAGTGCGCCGCCTGTTCAAAAACGTTCACTCAACTGTCCGTGTTACGATCGCACGCAGTCATACATTCGTCGAAAAAACCGTTCCGTTGCCGCATCTGTTCGAAATCGTTTCGTCACGCGTACAGTTTACGAAAACACCAAAAAAATCACACCGCGGATGAAAAACGGTACCAGTGTGAACGATGTTTTCGAAAATTCACCGAACCGGCCCACCTAAACGACCATAAAACCTCCTGCCACTTcaaacaaatcaaaaatatttcactcGAATGTGAAACATGTTCGAAACTATTCACTAGCCGCGGCAATTTACGTCGCCATCAGTTCATTCACAGCAATGAAAAACCGCACACGTGTAATATTTGTCGGAAAATGTTTGCGGATGCGTCAACGTTGAAAATTCACGCGAGAACTCACACCGGTGAACGGCCGTTTCGGTGTGATATTTGTTCGCGCGCGTACTTTAGTTCGTTCAATTTGAAACAGCATCGCAAAAGTCATACGGGCGAAAATGCGATTCAGTGTGATGTGTGCTTTAAAGTGTTCTTCGACACGTCCAAGTTGAAGGTTCATCAGCGGGTGCACACTGGCGAGAAACCGTACTGTTGTACGGTGTGTTTGAAAACGTTCGCGTATTCAAGTGTTTTACGGAAACATGAAAGAACGGTGCATTCGAACGAAAAATGA
- Protein Sequence
- MDDFADESSDKEVKIEEKFGKDLSSVNCVFLSTKPQVNSTKFFQESNELQNIKKEYLTDSEEGNVKLEPIENESHESTEFSQENARLRNIKDECLTDSEENNEIENSNYFTSINNLHSEIKIEPSEGNENCDENSADSVQIVQTVDELKCNWCSKTFSFLSNLKHHEKKTHDTKSTQCDICLKTFARWATLRVHKRLHTGEQLYKCELCPKKFTQSSGLKQHQLSHAGIKPYQCDTCSKTFTALNSLKEHERLHTGDGLFRCDTCFKTFTRPKFLETHQRSHTGEKPFQCPTCSRTFVTAQTLKAHERIHTGERPFHCTTCPKAFITSSNLHKHEKRCVSDRKKCSVSNEFRESHKGMTQAQCDICFKTFSSFLNLNLHKDIHTGEKRFQCTKCSKSFINSGNLRRHQNIHTGEKLFKCDTCSKTFTQATSLKEHERIHTGENLFACKICSKTFTRATFVKKHERIHEWKKSIACHTCQQLFTTHAELKRHQTVHTGKTLYQCAACSKTFTQLSVLRSHAVIHSSKKPFRCRICSKSFRHAYSLRKHQKNHTADEKRYQCERCFRKFTEPAHLNDHKTSCHFKQIKNISLECETCSKLFTSRGNLRRHQFIHSNEKPHTCNICRKMFADASTLKIHARTHTGERPFRCDICSRAYFSSFNLKQHRKSHTGENAIQCDVCFKVFFDTSKLKVHQRVHTGEKPYCCTVCLKTFAYSSVLRKHERTVHSNEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -