Bneb019716.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachynemurus nebulosus
Gene Symbol
-
Assembly
GCA_035578155.1
Location
JAPWDM010000006.1:3373681-3389788[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.011 0.61 12.0 1.8 2 23 155 176 154 176 0.97
2 24 0.0014 0.074 14.9 1.6 2 23 185 206 184 206 0.97
3 24 0.00084 0.046 15.6 0.8 1 23 212 235 212 235 0.98
4 24 0.0022 0.12 14.2 0.1 1 23 240 262 240 262 0.98
5 24 0.00023 0.013 17.3 1.8 1 23 267 289 267 289 0.97
6 24 0.0044 0.24 13.3 7.6 1 23 295 318 295 318 0.97
7 24 0.93 51 6.0 0.2 2 23 326 344 326 344 0.80
8 24 6e-05 0.0033 19.2 2.6 1 23 349 372 349 372 0.98
9 24 0.00022 0.012 17.4 0.5 1 23 383 405 383 405 0.96
10 24 0.00025 0.013 17.2 1.2 1 23 411 434 411 434 0.97
11 24 1.3e-06 7.3e-05 24.4 2.7 1 23 440 462 440 462 0.99
12 24 7e-07 3.8e-05 25.3 0.8 1 23 468 490 468 490 0.99
13 24 0.0058 0.31 12.9 1.4 2 23 716 737 715 737 0.97
14 24 0.00011 0.0063 18.3 0.8 2 23 746 767 745 767 0.97
15 24 0.0032 0.17 13.8 0.5 1 23 773 796 773 796 0.94
16 24 0.00061 0.033 16.0 0.1 2 23 802 823 801 823 0.97
17 24 3.8e-05 0.0021 19.8 1.9 1 20 828 847 828 850 0.94
18 24 0.53 29 6.8 10.3 1 23 856 879 856 879 0.97
19 24 2.4 1.3e+02 4.7 0.2 3 23 888 905 887 905 0.76
20 24 3.1e-05 0.0017 20.1 1.3 1 23 910 933 910 933 0.98
21 24 0.00014 0.0078 18.0 0.4 1 23 944 966 944 966 0.96
22 24 0.0014 0.074 14.9 0.9 1 23 972 995 972 995 0.96
23 24 4.6e-05 0.0025 19.6 3.5 1 23 1001 1023 1001 1023 0.99
24 24 4e-07 2.1e-05 26.0 0.6 1 23 1029 1051 1029 1051 0.99

Sequence Information

Coding Sequence
ATGGGCGATGGACTACCTAGTCAAATTTGTGTGGTCTGTTCAAATATTATCCAACAGTCATAtcattttagaaaagaatgCGAAAACACCGATCGGATATTGAGACAAATATTACAAGCGCATGAAGATGAGAAAGATGAATTGGAAGAAAAGTTAAAAGCCGAATTAACaaaaagcaataattttaatagccTAATTGAGACTGATGATGTATCGATCAAAGATGAACTAAACGAAGATGATAAGAATAACATTACATATAACGAGACATCCGATTTATCATTCGATCACAAAGACGATTCAGATTCTAGCGATCAAGACGACGAAGAAAATCATACGAAAAACGATTTGAATTTCCCACCAATATATACAGTTTcagaacaaaattcaaaatcgaaaaaagattCCGCGTGGCAAAAAGCGTTACAGTTAGGTCCGGATAAATGCGATCCAACaacaaaaacgtgtaaaatttgtaaaaaagtaTTATACAATGTACATTCATTGGTACGGCATGTCGAGACACACGATAAAAACCGAAAATATGCAATCGTTTGTTCCATTTGTAATAAAGGCTTCTACGAGAAACAGCACATTAAAAATCACATGTTACGACATAAAGGAGAAGCTCGATACCGGTGCGAAGAGTGCAAGAAACCGTTTTATGAATTGAACGCGTTGCGAGTCCACGTAAAGAAAAAACATCCTGAACAAAAATTTAACTGTGAAGAATGCTCGGAAGAATTTATTCTACAAGAAGATTTAGATTTACACATGAAAACACACAAAGACCAGCAGTTTAGTTGTTCAGATTGCGGAAAAACATTCCAGTATCGATATCGGTTACGAGAACATCAAGTGATGCACTCGAAAGAACGAACGTTTCATTGCAAGGAGTGCGATAAGTCGTTTAAGAGTAAACAGGTTTTGCAATTACATTATAAGCGATGTCATTCGGGTGAAAAAAAGCGAGAAGTTTGTAATGTGTGCGGAAAATCAGTGATTAATTTAAAGaATCACATATATATTCACAGCGACGAAAAATATAAGTGCAACCAATGTTCACAAGAATTCACAAACAAATATGTACTGGAAAAACATATTCGTCGAAAACATGGTAATATGGACGAGACAGAATTAAATCCGTACTTGTGTAGTATCTGTGGAAAACGTAGTGAAAACATGGCGAATTTAAACAGACATTATCTCACACACTCGGATGTTAAAACATACAAATGTCCAATCtgtgaaaaactatttaaaacaAATGACTTGCGCAATAGTCATATTCGTTATACGCACAATAACGAACGCCACTTTCAGTGTAGCGAATGTAATAAAAGTTTTCAGACGCGATCCGTGCTGAAAAAACATATACGGACTCACACGGGTGAACGCCCGTACGAATGTGAATTATGTGGCAAAGCTTTTCAGCAACGAAGCACGTTGAAGACACACATGAAAGTTCACGGATACTGTGTGGATAAAACCAATAAAAAGGAATTCATATCCGACactATACATGAAAATGATGGACTTCCAAAGCAGATGTGTTCTTTCTGTTCAAATAAAATTGTCGAATTGTACGTTTTTAAACAACAATGTGAAAAATCTGATCAAATATTACGACAAATCAATGAAGAGGATAAATCGGACGAAGATTTTAAATGGGACGAAACACTGGATTCATTGAATTGTAAATTAGGCTTGGATGAAGTTGATAATTATACAAACCAAATAAAAGATGAATTAAAACAAACCACTGAACAAACTGATTATAAAGAAAAATCCGACGATGATGGTGTCAATAATGATTTTATTGATGACAATGAAAAATACGATAATTCTCAAGATGAAAACAATGTTAATAATCAAACTAATGATGAGAGTTGTAGTAGCCCCCCAAATGTTCGCCGTACCAGTAAAAGATTACAGAAAAAAGATCGTAGAAAATTAGAAAACATCGATGAACAATTACCAGTAGAATTATATAAAAAGATCAAATCAGAACGCGATGATAATCCACTGAAAAATCAAGAAGCATATTTCTATCCAACCGAAACGTCCGATGGTGAACACCAAAAAGAGTCCGCATTAGAACGAGCACTACAGTTAGGTCCAGAAAAATGCGATCCAGTAACAAAAACATGTAAAATATGCAATAAAGTATTATATAATGTGCACTCGTTAGTCCGACATGTTGAAACGCATAATAAGAATCGAAAATTCGAAATTGTATGTCCAGTTTGTGGTAAAGGTTTTTACGAAAAGAAACATATCAAAAATCACATGTTGAGACATAAAGGTGAAGCACGATTTTTATGTGACGACTGTAAAAAACCATTTTATGAACTGAATGCACTTCGAGCACATGTCAAAAGGAAACATCCAAACAAGTCGATCCCATGTAAGGAATGTGACGAAGAGTTCGTATTACAACAAGATCTAGATCTTCATATGCGAACACACACCAAACATCAGTATTATTGCTCGGATTGTGGAAAACCGTTTGTGCATCGATATTTATTACGAAAACATCAGTGGATGCATGCCAAGGAGCGTATGTTCCATTGTAAACAATGCGAAAAGTCATTTAAAAGTAAACAGGTTTTACATTTGCATTATAAAAGATGTCATTCAGGCGAGAAAAAACGGGAAATTTGTAATGTATGTGGAAAATCGGTTGTTTATTTAAAGAATCACATTTATATCCATAACAACGAAAAATACGAATGTCTGGAATGTCCTCAAGAATTCACCAACAAATACTCCTTGGATAAACACATGAAACGCAAACACAGCAATCTGGACGAAACCACCCTAAATCCTTACTTATGTAACATCTGTGGTAAACGTAGTGAAAATCTAACCATGCTCAATCGCCACATCCTAACTCATTCCGATGAAAAAACTCACAAATGTCCCATCTgtggaaaattatttaaaagtattgAATTAGTCAACAGTCATGTACGCTACACGCACAATAATGTACGAAACTTTAAGTGTACAGTATGTGCCAAAAGTTTTCACACCACTTCTGGATTGAAATTACATATGCGGACACATACAGGAGAACGACCATACGAATGTGAAGTATGTGGGAAAGCGTTTCAGCAGCGTAGCACTTTGAAAACGCATATGAAAGTGCATGGTTTTACGAATTTTATTACTAAGCCTGCGCTAGAACAGAAAACAATCGAAGAATTGAACACgctataa
Protein Sequence
MGDGLPSQICVVCSNIIQQSYHFRKECENTDRILRQILQAHEDEKDELEEKLKAELTKSNNFNSLIETDDVSIKDELNEDDKNNITYNETSDLSFDHKDDSDSSDQDDEENHTKNDLNFPPIYTVSEQNSKSKKDSAWQKALQLGPDKCDPTTKTCKICKKVLYNVHSLVRHVETHDKNRKYAIVCSICNKGFYEKQHIKNHMLRHKGEARYRCEECKKPFYELNALRVHVKKKHPEQKFNCEECSEEFILQEDLDLHMKTHKDQQFSCSDCGKTFQYRYRLREHQVMHSKERTFHCKECDKSFKSKQVLQLHYKRCHSGEKKREVCNVCGKSVINLKNHIYIHSDEKYKCNQCSQEFTNKYVLEKHIRRKHGNMDETELNPYLCSICGKRSENMANLNRHYLTHSDVKTYKCPICEKLFKTNDLRNSHIRYTHNNERHFQCSECNKSFQTRSVLKKHIRTHTGERPYECELCGKAFQQRSTLKTHMKVHGYCVDKTNKKEFISDTIHENDGLPKQMCSFCSNKIVELYVFKQQCEKSDQILRQINEEDKSDEDFKWDETLDSLNCKLGLDEVDNYTNQIKDELKQTTEQTDYKEKSDDDGVNNDFIDDNEKYDNSQDENNVNNQTNDESCSSPPNVRRTSKRLQKKDRRKLENIDEQLPVELYKKIKSERDDNPLKNQEAYFYPTETSDGEHQKESALERALQLGPEKCDPVTKTCKICNKVLYNVHSLVRHVETHNKNRKFEIVCPVCGKGFYEKKHIKNHMLRHKGEARFLCDDCKKPFYELNALRAHVKRKHPNKSIPCKECDEEFVLQQDLDLHMRTHTKHQYYCSDCGKPFVHRYLLRKHQWMHAKERMFHCKQCEKSFKSKQVLHLHYKRCHSGEKKREICNVCGKSVVYLKNHIYIHNNEKYECLECPQEFTNKYSLDKHMKRKHSNLDETTLNPYLCNICGKRSENLTMLNRHILTHSDEKTHKCPICGKLFKSIELVNSHVRYTHNNVRNFKCTVCAKSFHTTSGLKLHMRTHTGERPYECEVCGKAFQQRSTLKTHMKVHGFTNFITKPALEQKTIEELNTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-