Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000002.1:36981578-36994859[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 0.028 1.5 10.8 7.8 1 23 15 38 15 38 0.97

2 29 0.00014 0.0077 18.0 1.0 2 23 45 67 44 67 0.96

3 29 0.00011 0.0062 18.3 1.3 1 23 73 96 73 96 0.97

4 29 0.0012 0.067 15.1 2.9 1 23 101 123 101 123 0.99

5 29 0.00013 0.0068 18.2 1.2 1 23 130 153 130 153 0.98

6 29 0.0031 0.17 13.8 0.1 1 23 158 180 158 180 0.94

7 29 0.00016 0.0086 17.9 3.3 1 23 186 208 186 208 0.96

8 29 1.1e-06 5.9e-05 24.7 3.3 1 23 214 236 214 236 0.98

9 29 2.8 1.5e+02 4.5 3.7 1 20 255 274 255 276 0.93

10 29 0.00011 0.0062 18.3 1.1 1 23 283 306 283 306 0.96

11 29 4.8e-06 0.00026 22.6 1.2 2 23 314 336 313 336 0.96

12 29 0.00059 0.032 16.1 0.6 1 23 342 365 342 365 0.96

13 29 0.023 1.2 11.1 6.1 1 23 371 393 371 393 0.98

14 29 0.14 7.5 8.6 0.2 1 23 400 423 400 423 0.97

15 29 0.0001 0.0056 18.4 0.1 1 23 428 450 428 450 0.97

16 29 4.5e-05 0.0025 19.6 4.6 1 23 456 478 456 478 0.98

17 29 9.6e-05 0.0052 18.5 4.8 1 21 484 504 484 506 0.95

18 29 0.017 0.91 11.5 3.6 3 23 514 534 512 535 0.95

19 29 1.8 1e+02 5.1 1.2 9 23 538 552 537 552 0.91

20 29 0.00084 0.046 15.6 0.1 2 23 560 582 559 582 0.96

21 29 2.5 1.4e+02 4.6 8.2 1 23 587 615 587 615 0.80

22 29 0.00032 0.017 16.9 5.3 1 23 621 644 621 644 0.97

23 29 0.01 0.56 12.2 4.0 1 23 650 672 650 673 0.96

24 29 0.53 29 6.8 0.6 9 23 676 690 675 690 0.95

25 29 0.00059 0.032 16.0 0.3 2 23 698 720 697 720 0.96

26 29 6.3e-05 0.0034 19.1 1.7 1 23 725 747 725 747 0.96

27 29 0.00095 0.052 15.4 5.3 1 23 753 775 753 775 0.97

28 29 6.4e-05 0.0035 19.1 3.1 1 23 781 804 781 804 0.97

29 29 0.01 0.56 12.2 4.0 1 23 810 832 810 833 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	0.028	1.5	10.8	7.8	1	23	15	38	15	38	0.97
2	29	0.00014	0.0077	18.0	1.0	2	23	45	67	44	67	0.96
3	29	0.00011	0.0062	18.3	1.3	1	23	73	96	73	96	0.97
4	29	0.0012	0.067	15.1	2.9	1	23	101	123	101	123	0.99
5	29	0.00013	0.0068	18.2	1.2	1	23	130	153	130	153	0.98
6	29	0.0031	0.17	13.8	0.1	1	23	158	180	158	180	0.94
7	29	0.00016	0.0086	17.9	3.3	1	23	186	208	186	208	0.96
8	29	1.1e-06	5.9e-05	24.7	3.3	1	23	214	236	214	236	0.98
9	29	2.8	1.5e+02	4.5	3.7	1	20	255	274	255	276	0.93
10	29	0.00011	0.0062	18.3	1.1	1	23	283	306	283	306	0.96
11	29	4.8e-06	0.00026	22.6	1.2	2	23	314	336	313	336	0.96
12	29	0.00059	0.032	16.1	0.6	1	23	342	365	342	365	0.96
13	29	0.023	1.2	11.1	6.1	1	23	371	393	371	393	0.98
14	29	0.14	7.5	8.6	0.2	1	23	400	423	400	423	0.97
15	29	0.0001	0.0056	18.4	0.1	1	23	428	450	428	450	0.97
16	29	4.5e-05	0.0025	19.6	4.6	1	23	456	478	456	478	0.98
17	29	9.6e-05	0.0052	18.5	4.8	1	21	484	504	484	506	0.95
18	29	0.017	0.91	11.5	3.6	3	23	514	534	512	535	0.95
19	29	1.8	1e+02	5.1	1.2	9	23	538	552	537	552	0.91
20	29	0.00084	0.046	15.6	0.1	2	23	560	582	559	582	0.96
21	29	2.5	1.4e+02	4.6	8.2	1	23	587	615	587	615	0.80
22	29	0.00032	0.017	16.9	5.3	1	23	621	644	621	644	0.97
23	29	0.01	0.56	12.2	4.0	1	23	650	672	650	673	0.96
24	29	0.53	29	6.8	0.6	9	23	676	690	675	690	0.95
25	29	0.00059	0.032	16.0	0.3	2	23	698	720	697	720	0.96
26	29	6.3e-05	0.0034	19.1	1.7	1	23	725	747	725	747	0.96
27	29	0.00095	0.052	15.4	5.3	1	23	753	775	753	775	0.97
28	29	6.4e-05	0.0035	19.1	3.1	1	23	781	804	781	804	0.97
29	29	0.01	0.56	12.2	4.0	1	23	810	832	810	833	0.96

Sequence Information

Coding Sequence: atgtggTATAAACATTATTGGTGGAAAAAACAGACGAAAAAGCACGTATGTACTTTTTGTAAACGAGGATTTAAATCGAAACATCTATTACACGATCATATAAATCGTAGACATATCACACAAGAAAAAGTCGAGTGTTTATTATGTAACGAAAGTTTTACGCATAAATATGGATTAAGTGTGCATATGAAACGAATTCATACAAAAGATTGGAAATACAAATGTGATAGATGCAATCGGTCATTTTTTGGACCGTTCGATTTAAAACGCCATATCAAACTCGACCATGAAAATTTCACTTACCAATGTGATATCTGTCAGAATAACTATAAATCACTTCAGTATCTTCAGCGACATAAAAAGACCCATGATCCTACATTCACCAGATTCACTTGCACCACTTGTAATGTAAGTTACGCAGacgaaaaaagtttgaaagcgcACATGAAAAAGAAGCATAGTTCAACGTCGTACATTTGTGATAAATGTGGAAAAAGTTTTGACGACGCCGTACGTCTCGGATATCATGTTAGCATTCatgataatgtgaaaaattttgaatgtgaTATCTGCCACAAGAGATTCCGTAATAAACCGTTACTCAGTAAAcacaaatatgtacataaaagtgaaaaacgTCATCAGTGTGAAATGTGTGAGAAAAGTTTCACCCAGCGAAGTAATTTAACGATACATTTACGATATCATACTGGTGAAAGGCCATATCGGTGTGAATTATtttGTATTGATGGCCAGTGGCGGTATAACTGTAAATGTTGCGAGAGATCTTTTAATAACAAACAATCCTGGTACAAACATTACTCGTGGGAAAACAAGGCgaaaaattacatatgtaaTATTTGTAACAAAGGATTTAAATATAATCGCCTATTACAAGTCCATACAGAACGTAAACATGCCACGTTAGTAGAAAAAGTCGTTTGCCAATTATGTAACGCAAGTTTCACCCATAAAGAGAATCTGAATGCACATATGAGACgaatgcataaaaaaaattggaaatataAATGTGACATATGCAATCGGCTATTTTTTACACCTCGCGAATTAAAACTTCATGTAAAATTGATTCACGAAGAAGCCACATATCATACATGCAATATCTGTCAGAATAGCTATAAAacacttaaattttttgaaCGACATAAAAGAACACATGATCCCACATTCACTAAATACAGTTGCGCAACTTGTGGCGCAAGTTACAATAACGAACTAATTTTAAAAGCACACATAAAAAGGAAACATGATTCAACCTCTTACATTTGCGATAAATGTGGAAAAAGTTTTGATGCGGCCGTAAATCTCAAGGACCATGTCAGTATTCATGATAACGTTAAAAGTTATGAATGTGATATCTGTCATAAGAAGTTCCGTAATAAACCGTTACTCCGTAAACACAAATATACACATGGGAGTGAAAAACGACATCAATGTGAACTGTGTGATAAAAGTTTTACGCAGCGAAATAATTTGACGATACATTTACGATGTCATACTGGTGAAAGACCATATGGTTGTGAATTGTGCAATGAGTGTTTTATTTCAAGAAGTGTTTTAAATATACACAAGAAAAAACATCATCTGAATACCTATAAATCATTCCGTTATCTTCAACGACATCAAAAAACCCATGATCCCACATTCACTAAGCTCATTTGTCCCACATGTGACACTAGTTACAATGATGAATTACTTCTGGCAGCACACATGAGAAAAAAACATCAACCAAAGACTCACGTTTGTGATAAATGTGGTAAAAGTTTTCAAGATGCCAAGAAATTTCGTAACAAACCGTTACTTCAAAAACATAAACATATACACAAGGGTGAAAAACGACACCAGTGTGAAGTTTGTGAGAAACGTTTCACTCAACGAATTAGTTTAAGGTTACATTTACGCCGATGTCATACCGGTGAGAGACCATTTGAATGTGAGTTATGCAATGAATGTTTTATTTCAAGAAGTATTTTGAATGCACATAAGAAAAAACATCATTTGAATAGTTATAAATCGCCTCAGTATCTTCGAAGACATAAAAGAACACATGATCCCACATTCACTAAGCTCATTTGTTCCACATGTGACACTAGTTACAATGATGAATTCCTTCTGGCAGCACACATGAGAAAAAAACATCAACCAAAGACTCACGTTTGTGATAAATGTGGGAAAAGTTTTCAAGATGCCGTCAGTCTTCGACATCATGTCAGCATTCAtgataatgttaaaaatttcgaatgtGATATCTGTCAGAAGAAATTTCGTAACAAACCGTTACTTCATAAACATAAACATATACACAAGGGTGAAAAACGACACCAGTGTGAAGTTTGTGAGAAACGTTTCACTCAACGAATTAGTTTAAGGTTACATTTACGCCGATATCATACCGGTGAGAGACCATTTGAATGTGAGTTATGCAATGAATGTTTTATTTCAAGAAGTATTTTGAATGCACATAAGAAAAAACATCATTTGGTAACCAGTTAA
Protein Sequence: MWYKHYWWKKQTKKHVCTFCKRGFKSKHLLHDHINRRHITQEKVECLLCNESFTHKYGLSVHMKRIHTKDWKYKCDRCNRSFFGPFDLKRHIKLDHENFTYQCDICQNNYKSLQYLQRHKKTHDPTFTRFTCTTCNVSYADEKSLKAHMKKKHSSTSYICDKCGKSFDDAVRLGYHVSIHDNVKNFECDICHKRFRNKPLLSKHKYVHKSEKRHQCEMCEKSFTQRSNLTIHLRYHTGERPYRCELFCIDGQWRYNCKCCERSFNNKQSWYKHYSWENKAKNYICNICNKGFKYNRLLQVHTERKHATLVEKVVCQLCNASFTHKENLNAHMRRMHKKNWKYKCDICNRLFFTPRELKLHVKLIHEEATYHTCNICQNSYKTLKFFERHKRTHDPTFTKYSCATCGASYNNELILKAHIKRKHDSTSYICDKCGKSFDAAVNLKDHVSIHDNVKSYECDICHKKFRNKPLLRKHKYTHGSEKRHQCELCDKSFTQRNNLTIHLRCHTGERPYGCELCNECFISRSVLNIHKKKHHLNTYKSFRYLQRHQKTHDPTFTKLICPTCDTSYNDELLLAAHMRKKHQPKTHVCDKCGKSFQDAKKFRNKPLLQKHKHIHKGEKRHQCEVCEKRFTQRISLRLHLRRCHTGERPFECELCNECFISRSILNAHKKKHHLNSYKSPQYLRRHKRTHDPTFTKLICSTCDTSYNDEFLLAAHMRKKHQPKTHVCDKCGKSFQDAVSLRHHVSIHDNVKNFECDICQKKFRNKPLLHKHKHIHKGEKRHQCEVCEKRFTQRISLRLHLRRYHTGERPFECELCNECFISRSILNAHKKKHHLVTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -