Bneb008274.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachynemurus nebulosus
Gene Symbol
-
Assembly
GCA_035578155.1
Location
JAPWDM010000001.1:164621687-164635729[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 6e-06 0.00032 22.3 0.3 1 23 249 271 249 271 0.99
2 28 0.0025 0.14 14.1 3.2 1 23 273 295 273 295 0.96
3 28 5.2e-05 0.0028 19.4 1.3 1 23 303 325 303 325 0.98
4 28 0.00021 0.011 17.5 2.6 1 23 327 349 327 349 0.96
5 28 1.5e-05 0.00082 21.1 0.9 1 23 357 379 357 379 0.98
6 28 0.0013 0.073 14.9 3.7 1 23 381 403 381 403 0.97
7 28 0.044 2.4 10.2 0.6 2 23 430 451 429 451 0.95
8 28 0.00066 0.036 15.9 0.8 1 23 460 482 460 482 0.99
9 28 0.00019 0.01 17.6 0.6 1 23 539 561 539 561 0.99
10 28 0.025 1.3 10.9 2.8 1 23 563 585 563 585 0.96
11 28 0.00058 0.031 16.1 0.7 1 23 594 616 594 616 0.98
12 28 0.26 14 7.7 3.7 1 23 618 640 618 640 0.95
13 28 0.00058 0.031 16.1 0.7 1 23 649 671 649 671 0.98
14 28 0.079 4.3 9.4 3.5 1 23 673 695 673 695 0.96
15 28 0.001 0.057 15.3 1.3 1 23 704 726 704 726 0.97
16 28 0.33 18 7.4 4.8 1 23 728 750 728 750 0.96
17 28 0.00061 0.033 16.0 0.7 1 23 759 781 759 781 0.98
18 28 0.75 41 6.3 3.5 1 23 783 805 783 805 0.96
19 28 0.0023 0.13 14.2 0.2 1 20 814 833 814 835 0.94
20 28 2.2e-05 0.0012 20.5 0.7 1 23 856 878 856 878 0.98
21 28 0.047 2.5 10.1 1.6 1 23 880 902 880 902 0.96
22 28 0.00048 0.026 16.3 1.1 1 23 908 930 908 930 0.98
23 28 5.9e-07 3.2e-05 25.5 1.3 1 23 936 958 936 958 0.96
24 28 4.3e-06 0.00024 22.8 1.2 1 23 964 986 964 986 0.98
25 28 8.2e-06 0.00044 21.9 1.1 3 23 999 1019 997 1019 0.95
26 28 0.0026 0.14 14.0 7.7 1 23 1025 1047 1025 1047 0.97
27 28 3.8e-05 0.002 19.8 5.4 1 23 1053 1075 1053 1075 0.98
28 28 0.00072 0.039 15.8 2.4 1 23 1081 1103 1081 1103 0.98

Sequence Information

Coding Sequence
ATGGAGTATGAAGATTTAGTAAACGCtgatttcaataatatttgtcGAACTTGTTTGAGTCAAGATAAAgcaattaaacaaatatttgaagttgaaaaaaatgaagcaGTTAAATTCGTAACAATATTAAAAGAATGTACTTCAATTCAAATATCAGCAGACGATAATTTACCAAAGGGGTTATGTCAGGATTGTATAGATCAAGTATTCAATCATTACGAATTCAAGAAGAAAAGTTTGATATCGGAAAAGAAATTACTTAACATTATTCAGCTTAAACGTAATGAAACTCCCAATAAAGTATTATCAGATACCGTAACTAAAGCGGAAGTAATTCAAGATGATAATTCAACATCCGATCACATTTCTGATGATGATTTTAATGATTCGAATGTAGAATTATCAAACGTATCAGAAACTATCGCTAAAATAGAAATCAAAAATGAAGTTCAATTCGGTCATTCAGTATTTGGTCACGCCTCCAACTCTGACAATTCTGATGATTCTAATACTGAATCATCGAATCCGATAGCtaaaatcgaaatcaaaaatgAAATTCCCGATAATGTTCCTAATGAGGATTATTATTGGTCAGAATTAAACAACGTAAATGTAAAAACTGAAGCAACCGTAGTGGATAATGAAACACCCGATAAAACTGGAACAAAAACGAACCAAAATGAATATAGTGAATTAAAGGCGTTATTATCTCAAACGGCAGATAAACCTGTTGTAGAACGAAAATTTAAATGTGAcgaatgtaataaaacatttataaatgCTGGACGCCTGCAAGCGCATCTTTTAACGCATCGTTTTCATTGCTCGTCATGTCCACGACGCTTCAAAAATTCGGACGATTTGAAAGAGCACTCAAAAGAGCATGAAAATGAACCAATAAAACAGCACAAATGTGAtgaatgtaataaaacatttcaaaatgCTGGACGATTACAAGCGCATCTGTTAACGCATCGTTTTCATTGCTCCGTGTGTTCGAAACGATTCAGAAATTCGGACGATTTAAAAGAGCACGCGAAAGAGCATGAAGACGAGCTAATAAAACAGCATAAATGCGAtgaatgtaataaaacatttataaatgCTGGACGACTACAGGCGCATCTGTTGACGCATCGTTTTCGTTGCTCGTCGTGCCCAAGACGATTTAAACATTCGGACGATTTGAAAGAGCACTCGAAACTACATGAAAATGAATCTACGAATCAACAACTCGAATGTGATGATAATAAAATGTTACAAACACATCAGTTAGCGCATAAGTTGAATTGTTCGTTATGTTCTCTACAATTTGAAAGTTCTGACGAGTTGAAGGAACACTTTAAATTACATGAAAATGAGCCGATAAAAAAGAAGTATAAATGTGACGAGTGTAATAAACGATTTATGATGGCTGGAAGATTGCGAGCACATAAATTAACACACGGCGtgCAACTTAAAAATTCTAACGAGTTGAAAGAACATTCTAAAGGGCAAGATAATGAATCTGTAAATCAACAATCAGATGATGAATACACTAAATCGTCTATAGATGATGGACTACAACAATCTGAGGAATTGAAAGAACATGAAAATGAGCCTCAAGAAAAGAACTATAAATGTGACGAATGTAATAAATCGTTTATAATGGAGGGAAGACTACGGGCACATAAATTAACACATGGTTTCCACTGTTCTACGTGTTCTCGTCGATTTGAAAATTCTCAAGAATTGGAAGAGCATTCTAAAGAACATGAAACCGAACCTATACAAAAAAGATATAAGTGTGACGAGTGTAATAAAAGATTTGTATTGCCCGGAAGGTTACGAGTACATAAGTTAAAGCATggttttcattgttttaaatgttttcgACGGTTTGAAAATTCTCAAGAATTAGCAGAGCATTCTAAAGAACACGAAAATGaacctatacaaaaaaaatataaatgtgacGAATGTAATAAAAGATTTGTATTGCCCGGAAGGTTACGAGTGCATAAGTTGAAGCATggttttcattgttttaaatgttttcgACGATTTGAAAATTCCGAAGAATTGGAAGAGCACTCTAAAGAACATAAAAATGAACCTGTACGAAAGAAACATAAATGTGACGAATGTAATAAATCGTTTATAGTGGCTGGAAGACTGCGAGTACATAAGTTAAAGCATGGTTTTCATTGTTTTACATGTTTTCGGCGATTTGAAAATTCTCAAGAATTGAAAGAACATTCTAAAGAACATGAAAATGAACCTGTACGAAAGAAATATAAATGTGATGTATGTAATAAAAGATTTATAATGCCGGGAAGGTTACGGGTACATAAGTTAAAGCATGATTTTCATTGTGTCACATGTTTCCGTCTATTTGACAATTCAGAGCAATTAAAAGAACACTCTAAACAACATGAGATTGAaccaataaaaaagaaatataaatgtGACGTGTGTAATAAAAGATTTGTGATGCCCGAAAGATTGCGAGCGCATAAATTGTCATGTTTACCACGTTTTGTAGCTAAAGAATTTGAAATTGAAGATGAGCCCGTAGAGAAGAGATTTAAATGTGACCATTGTGGTAAACAGTATGCGAATGCTGCAGGACTAAAAGCCCATAAATTAACACATGAATTTCATTGCCCTACGTGTCTTCTACGATTTGAGAGTTCCGAGGAGTTACAAGAACACTCTAAACAACATCCAAATCcgaataattttgtttgttatgTATGTGGAAAAGAATATCAGAAGAGAGAGAATTTACGTATGCATTTAAAGaatcaCACCGGTGAAAAAGATTTCCTTTGTACATATTGTGGGAAAACATTTTCCTATCAAGGTAATTTTAATGCGCATGTACGTACACATACTGGAGTTCATCCTTATAAGTGTAAATATTGTGGTAAAGGTTTTCCCGATAGTAGTTCGTGGAAGAGTCATTTATTTACCCATGATATTCTAAGCAATAAAGTTGAACGAACGCACCTGTGTCCTGTATGTGGAAAAGGTTTCTATCGGAAAGGAACTTTACGATCCCATATGTTGTCGCATCAGAATATTCGGAAACATAAATGTACAGTGTGTTCGAAAAAGTTCAAATCTTCTCAACAGCTCAAACatcattttaatatacatactggTGCGGAAATGTTTACCTGTACCTTCTGTGGTAAAAGTTTCAATCGAAAATGTACTTTACGTATTCATACCAGAATTCATACTGGTGAGAGGCCTCACGTTTGTACAGTGTGCAATCGTGGTTTCATACAACGTCATGTTCTTGTTCAACATATGAACACTCATAAAACAATGACGAATGAAGTTGAAAACGAATAA
Protein Sequence
MEYEDLVNADFNNICRTCLSQDKAIKQIFEVEKNEAVKFVTILKECTSIQISADDNLPKGLCQDCIDQVFNHYEFKKKSLISEKKLLNIIQLKRNETPNKVLSDTVTKAEVIQDDNSTSDHISDDDFNDSNVELSNVSETIAKIEIKNEVQFGHSVFGHASNSDNSDDSNTESSNPIAKIEIKNEIPDNVPNEDYYWSELNNVNVKTEATVVDNETPDKTGTKTNQNEYSELKALLSQTADKPVVERKFKCDECNKTFINAGRLQAHLLTHRFHCSSCPRRFKNSDDLKEHSKEHENEPIKQHKCDECNKTFQNAGRLQAHLLTHRFHCSVCSKRFRNSDDLKEHAKEHEDELIKQHKCDECNKTFINAGRLQAHLLTHRFRCSSCPRRFKHSDDLKEHSKLHENESTNQQLECDDNKMLQTHQLAHKLNCSLCSLQFESSDELKEHFKLHENEPIKKKYKCDECNKRFMMAGRLRAHKLTHGVQLKNSNELKEHSKGQDNESVNQQSDDEYTKSSIDDGLQQSEELKEHENEPQEKNYKCDECNKSFIMEGRLRAHKLTHGFHCSTCSRRFENSQELEEHSKEHETEPIQKRYKCDECNKRFVLPGRLRVHKLKHGFHCFKCFRRFENSQELAEHSKEHENEPIQKKYKCDECNKRFVLPGRLRVHKLKHGFHCFKCFRRFENSEELEEHSKEHKNEPVRKKHKCDECNKSFIVAGRLRVHKLKHGFHCFTCFRRFENSQELKEHSKEHENEPVRKKYKCDVCNKRFIMPGRLRVHKLKHDFHCVTCFRLFDNSEQLKEHSKQHEIEPIKKKYKCDVCNKRFVMPERLRAHKLSCLPRFVAKEFEIEDEPVEKRFKCDHCGKQYANAAGLKAHKLTHEFHCPTCLLRFESSEELQEHSKQHPNPNNFVCYVCGKEYQKRENLRMHLKNHTGEKDFLCTYCGKTFSYQGNFNAHVRTHTGVHPYKCKYCGKGFPDSSSWKSHLFTHDILSNKVERTHLCPVCGKGFYRKGTLRSHMLSHQNIRKHKCTVCSKKFKSSQQLKHHFNIHTGAEMFTCTFCGKSFNRKCTLRIHTRIHTGERPHVCTVCNRGFIQRHVLVQHMNTHKTMTNEVENE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-