Bneb011498.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachynemurus nebulosus
Gene Symbol
-
Assembly
GCA_035578155.1
Location
JAPWDM010000002.1:37026529-37033475[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.0011 0.06 15.2 0.3 2 23 15 37 14 37 0.95
2 24 6.9e-05 0.0037 19.0 4.1 1 23 42 64 42 64 0.98
3 24 1e-05 0.00057 21.6 4.2 1 23 74 96 74 96 0.98
4 24 0.0018 0.099 14.5 0.1 3 23 104 124 102 124 0.95
5 24 5.4e-05 0.0029 19.3 3.1 3 23 132 152 131 152 0.98
6 24 1e-07 5.6e-06 27.9 2.3 1 23 158 180 158 180 0.98
7 24 0.00061 0.033 16.0 0.4 1 23 205 227 205 227 0.97
8 24 0.0075 0.41 12.6 6.2 1 23 232 254 232 254 0.97
9 24 4.8e-06 0.00026 22.6 1.9 1 23 260 282 260 282 0.99
10 24 3.5e-06 0.00019 23.1 2.2 1 23 288 311 288 311 0.97
11 24 0.00013 0.007 18.1 3.2 1 23 316 338 316 338 0.99
12 24 0.0022 0.12 14.3 3.7 1 23 347 370 347 370 0.97
13 24 0.00063 0.034 16.0 0.1 1 23 375 397 375 397 0.97
14 24 4.5e-05 0.0025 19.6 0.7 1 23 403 425 403 425 0.99
15 24 1.4e-06 7.4e-05 24.3 1.2 1 23 431 453 431 453 0.99
16 24 0.00083 0.045 15.6 1.6 1 23 488 510 488 510 0.98
17 24 9.3e-05 0.0051 18.6 1.9 1 23 516 538 516 538 0.98
18 24 1.9 1e+02 5.0 5.6 3 23 546 567 544 567 0.91
19 24 0.027 1.5 10.8 0.4 2 23 572 593 572 593 0.94
20 24 0.00038 0.021 16.7 1.5 1 23 602 624 602 624 0.98
21 24 0.0038 0.21 13.5 0.2 1 23 630 652 630 652 0.96
22 24 0.0052 0.28 13.1 2.9 2 23 659 680 658 680 0.96
23 24 5.1e-06 0.00028 22.5 3.1 1 23 686 708 686 708 0.98
24 24 0.00057 0.031 16.1 3.0 1 23 714 737 714 738 0.95

Sequence Information

Coding Sequence
ATGAAAACTCACAAaaaacgacattttcaaaaatttgtcgTAACATGTGATCTATGTTCAAAAGGATATTATACCAGGCAAGAATTAGCGCGTCATATGAACGCTCAACATGGCGCCAATGAACACAAGTGTGATTTTTGTGATCGATATTTTGTTACAAGTTATTCATTAAAGATGCATATGCGATTGCATACGGAAACGGATGAGACGCGGGAACAACATCAATGTGATAAATGCGAGAAAACGTTcaaagataaaatttatttgaaacgACATTTAAAAATCCACGCGGGTGAAACCGCTGTAATTTGTGATATCTGTGGCAAAGttctaaattcgaaaaaaagtttgaGCGAACATTTAGATTTACACAGTGGCATTAAGTCACGATGTTGTAATGTTTGCGGTAAACGTTTTGTCAAACGTAACACGCTGATCATCCACCAACGCACTCATACCGGCGAAAAGCCGTACGAATGCAAGGAATGTGGAAAATGCTTTACACAACGTAGTAGTCTCGCAATACATATTCGCTATCATACTGGTGAACGACCATATCAaaacGATATTAACAAACGCAAATCGGTGCCAAAGGATTATAACGAAAGGAAATTTGTATGTGAAATTTGTGCTAAACGTTTTATAACGCTCAAATATTTAATCTCTCATCGAGCACGTCATCGCCCACCAAAACATATATGTACCTACTGTCCGAAAAAGTTTCTCCATCCTTGTCAACTTAACGATCATATGAACACCCACACAAAACAATGCCCCTATAAGTGTGATATATGCGATAAAGCCTTTACGTCAAAAGGTACGTTATATTCGCATAAGAAACGACATTTTCCACTGTACGATTATAAATGTACCCATTGCGATAAAGAATTTTACACACCAGTGGAACTAAGAAAACACATTACGAGATGGCATGATACTCCCAAGTACACATGTCACatatgtgaaaaaaaattgtatactgAAAAAGATTTAAAGAGACATATACAATCACATGATCCAGAGGCAAAACGTTGCAAATTTCAATGTGACTTATGCCCCAAATCATATGTTCACTTGTGTTcgttaaaaattcacaaaaagtCAGCACACGATAAAGTTagatatgcatgttatgtaTGTGGAAAAGCGATGACATCTTCTGAGTCGTTAAAAGATCACATCAATTCACATTTAGATATTCGCCCATACAGCTGCGACTTCTGTGACAAAAAATTCGTTCGACGTGAAGCAATGATCTTACACGTACGGACACACAGCGGTGACAAACCCTACAAGTGTACGCAATGTGATAAATCATTTACACAAAAAGGCCCCTTAACAATACATTTGCGAAATCATACCGGTGAAAAGCCGTACCATTGTCAATTGTGTGAGCAGAAAGCAACTTTGAATTCGTTAGATGTGCGAAAATACTTTATTCACGAAGCCGCTCAAATGGGTCATAAGTGTCCcgtctgttttaaaatattggCCACAAAAAAATCCGTTAAAGTTCACATGCAAACGCACAACAAAGAATACAATCACAAATGTGATGTTTGCTCGAAAGCGTTTAATCGACGAATTCTTTTGATAGCTCATCGAAAACGACATTTTGATAATTACGTGGTTCATTGTTACGTCTGTTCGAAAGGTTTCCACACGaaacgggaattacatcagcacAACGCACGAAATCatagttttaaaaatgtttGCGACATATGCTTGAAGTCGTTTGAGACAGTCGAAAAACTGACACAGCATTCGTTCATGCACGCCAATCGAAGTCACGAAACAAAATTCGAATGTGACATCTGtggcaaaatttatttacataaaaaaagttggAAACGGCATATGGCGACACACTCCAAACAAACCTTCTATATCTGTGATGTTTGCGGAAAAAGTTTAGGTTCAAAACAAAGTTTGGACAATCATCTGCTATTTCATTTGGGCGTGAAACCGGTCCAGTGCAAATACTGTGATAAACGATTTGGAAAGAAAAGTTCTCTTGTATGTCACGAACGTGTTCACACCGGCAGTAAACCGTACGAGTGCACTCATTGTGGTAAAAATTACCGACAACGCACTTCGCTTGTGATTCATATGCGATACCATACAGGGGAGCGGCCCTATAAGTGTGAATTGTGCGAGAAAGGATTTGTTAGTAAATATCTTCTAACAAGTCATCGAAGTAACAAACATCATTTAACCTGA
Protein Sequence
MKTHKKRHFQKFVVTCDLCSKGYYTRQELARHMNAQHGANEHKCDFCDRYFVTSYSLKMHMRLHTETDETREQHQCDKCEKTFKDKIYLKRHLKIHAGETAVICDICGKVLNSKKSLSEHLDLHSGIKSRCCNVCGKRFVKRNTLIIHQRTHTGEKPYECKECGKCFTQRSSLAIHIRYHTGERPYQNDINKRKSVPKDYNERKFVCEICAKRFITLKYLISHRARHRPPKHICTYCPKKFLHPCQLNDHMNTHTKQCPYKCDICDKAFTSKGTLYSHKKRHFPLYDYKCTHCDKEFYTPVELRKHITRWHDTPKYTCHICEKKLYTEKDLKRHIQSHDPEAKRCKFQCDLCPKSYVHLCSLKIHKKSAHDKVRYACYVCGKAMTSSESLKDHINSHLDIRPYSCDFCDKKFVRREAMILHVRTHSGDKPYKCTQCDKSFTQKGPLTIHLRNHTGEKPYHCQLCEQKATLNSLDVRKYFIHEAAQMGHKCPVCFKILATKKSVKVHMQTHNKEYNHKCDVCSKAFNRRILLIAHRKRHFDNYVVHCYVCSKGFHTKRELHQHNARNHSFKNVCDICLKSFETVEKLTQHSFMHANRSHETKFECDICGKIYLHKKSWKRHMATHSKQTFYICDVCGKSLGSKQSLDNHLLFHLGVKPVQCKYCDKRFGKKSSLVCHERVHTGSKPYECTHCGKNYRQRTSLVIHMRYHTGERPYKCELCEKGFVSKYLLTSHRSNKHHLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-