Bneb006929.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000001.1:127928926-127929618[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.3e-08 8.5e-06 26.8 0.0 2 39 11 49 10 54 0.89
Sequence Information
- Coding Sequence
- ATGCCGAAGACACCAAAAGTACCATATAGTAAAGAAAATTTACAGAAAGCGATCGAAGCTGTCGAAGATGCTACAAAGTTATCTACAAAGCAAATTGCTGAAAAATACGGTGTTCCGAGGTCCAATCTCCGGTACTGCATTAAGAATCCGGGACATAAAACCAGCTTAGGGCCATCACCTGTATTAACTGTTTCTGAAGAAAGTCGTCTCGAAGACTGGATAATAATATCAGCAAGAAAAGGATTTCCCCGAAATAAAGAGGACATCTTAGACACCGTACAAAAGTTTCTGGTGGAAAACCCTCGTCctaattcattttcaaataataggTCAGGTGACGGTTGGTGGAaggcatttttgaaaaaacatccGAGGTTGACAATCAGGACAGCAGAAGGAGTGACAAAAGCGAGTTCTTGTGTTTCGGAAAAAGATATAAGAGGGTGGTTTACTGAAATTCAGAATTATGCTGCCGAAAAAGATTTGACTCCCATTTTAAGTGAACCACATCGCATTTTTAATGCAGATGaaactaattttcaaatttgcgtTAAAACTGGTCAAGTGTTAGCAGAAAAAGGTgtgaaaaatgtatataatgttGAACAATCTCAAGCTAAAGAGTCTATTACAGTATTGTTCACCTTCTCGGCTGCAGGAGAAGTCTGTTGTCCATTCATTGTTTATCCTTAA
- Protein Sequence
- MPKTPKVPYSKENLQKAIEAVEDATKLSTKQIAEKYGVPRSNLRYCIKNPGHKTSLGPSPVLTVSEESRLEDWIIISARKGFPRNKEDILDTVQKFLVENPRPNSFSNNRSGDGWWKAFLKKHPRLTIRTAEGVTKASSCVSEKDIRGWFTEIQNYAAEKDLTPILSEPHRIFNADETNFQICVKTGQVLAEKGVKNVYNVEQSQAKESITVLFTFSAAGEVCCPFIVYP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01359662; iTF_00186082; iTF_00147249;
- 90% Identity
- -
- 80% Identity
- -