Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000003.1:15240770-15282398[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.9e-08 3.8e-06 27.9 0.0 2 38 108 144 107 150 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.9e-08	3.8e-06	27.9	0.0	2	38	108	144	107	150	0.91

Sequence Information

Coding Sequence: ATGTTTCTGGGCCCTGGCAACCCTATTTTGTCGCCGGGCCTGGTCGAAGATAGTATAAATAAAGATGAATATACGCGAATCACGACACCACGACAGGATGTGTTATTTAAGAAAggatatttaagtaaaaaaaagccAACGGTGGTGAGTAACGGTGATAATAGTTGTGCTCAAATTAATGGTGGCAGTATTGGTAGCGGTGCAAGCAGTAACGATGGTCAAATGAATGCCACAACAAATGGCGGCAGTTGTGGGGAGTCGAATCCATCGACAGGATACAATTCAACAACGGGCGGTGGCACTCCAGAACATCATTCCTTAGaagAAAATATGCAAAAAGCTATAGAAGCCGTGAAAGGTGGAATGCCCAAAAAAACGGCTTCAAAAACATACGGTGTACCACGCTCCACTTTACAATTTAGAGTAAGCCAAAAGTTTGTTAAAACAAAGCCAGGAAAAGATCCGGTATTAACTGAAATGGAGGAGAAGATGTTAATTGATTGGATTTTTCAATCTTATAAAAAAGGTTTTCCCGTTAGAAAAGAAGATATTTTTATATCAGTTAAAGAATTTTTGGACGCGAACCCACGACCTAATCCATTTCCTAATAACTATCCAGGCCCTGGATggtacaaattatttaaaagaagacATAAATGTCTGTCAGAGAGGACATCTGAAGCAGTCACACCGGCTAGCTCTAGGGTTTCTGAATTAGATGTACGAAACTGGTTCCAAAGTGTGTATAGTTACTTAAAAGAAGAACATTATGATGATATTTTAAATGACCCGGAAAGGATATATAACGGCGATGAAACCTCATTTCTGCTATGCCCGAAAACCAAAAAAGTGTTAGCAGAAAGAGGTGCAAAAAATGTCTATGAAGTTGATCGTGGTCAAGCAAAAATGGCTTTGACAGTAATGTTTACGTTTTCAGCGTCAGGTGAAATAACTCCACCAATGATTATTTACCCAAATAAAAGGCTTCCCAAACAATTGATACATTCTGTTCCTAAGGAGTGGGGGATAGacGGGCATAAGACCCACTTGGACAGGAAACTAAGTGATTTATgtaatgaattaaaaataatattgattgCACTTTATCCTAACTGTACGAGAATTTTACAACCGGCAGATGTGGCCGCCTTTAGACCATTGAAATTAGGATGGCAACAAGAAGTCATTAATTGGAGAAGAACACATCCGTACGAAGAACTTACTAAAGAAAAATTTGCACCATTACTTAAATTAGTAGTTGAAAAGCAtataaaaactgaaacaattatAAATGGTTTTCGTGCTTGTGGACTCTACCCCTGGAACCCGAATAACAttgatttttctaaatgtttagGGAAGAAACGAAATCAtgataatttgttaataaatgaAGATGAATTAACAATTAGCTTTAAAAGATTTAAGGAAATTATAGGGCAAGAATTAATTAACGACTTTTTAGCACAAGATGTTCAAAGTAAAGATCAAAACAATCAAGACAAATCAATTGGATATAAAATCTGGTgtgaatttaagaaaattggaGAAAGTCTGAACAACAACAATCAAATTGAAATCAAAGAAGTTGACACtgataacaaaaacaaaacttcagttgaacaaaatgaaaataatttagaaattgaAGTAGATAATGATGAAGAATTAAATTCAGAACTTAGGATGTTTATTTCTAATTTGCCGGTAATTCTAGAAGAAGAACTATTGACTGAAAATAATGCATTGGAAAACACGCCAGTGGAAGAAAATAGTAAGGAGTGCAATAAAGAAAATAATGCGATTTCACACCAAACATCAAATATATCTGATTTCTTAATTTATCCGAAAACACCAGAACGAAAAGGTGTGAAAAATTGTGAACGTAAGCCGTTTGTTCTTACATCCCAAAAGTGGCAAGAAATAGaagaccaaaaaaaagaaaaaaaattagaagaattaAAACGAAAGGAATCTAAAAAAATGGAAAGAGAAGCTAAAAAAGAATTAGCAAAAAGTAAGCTGAAACCTACagGGTATGTCGATTATTTTTCTAAAGTTGCGTCCAGACCAACGCGCCGCGCAGTGCAGAATGCTCGCGAACGTTGCAAAACAGTCAGTTTGGACGTGTACGCGCGCACAAACGCGTACAGCTGCAACAGTTTGCGCACAAATAAACATGTTCATGATAGTGTCGATGGAGGTGATTACTATGACACGGATCTCGAACAACCTCAACAATTCATTTTTCATAATGGTTTTGTTGACCAGCACGGAGTATTTTACGTTAACggTTATGATCCTTATTCGGTAATGTTGATTGGACCACCTCCGCCGCCCCCTGGTCAATTTATACATCCTGTTGATTTTTATCCCCCACCGTCTGCTGGGGTGCCGTGTTTTCCTCAAATAGTTCCGTCCACCGTATTTAATCCGGTCGATAGTGCTGCATCCATTAGCAGTAAAGCCTGTTCGACAGATTCACAGacTGAATCAAATAGCCCACACAACGAAATCGAATCGGGTGATACAAACTTCGCATCGTCTGAACAAAGTCAATCATCGTCATCCGTATATAATCACGTAGATAACGAAAGTGAGAACGATGGAATCAAAAAGAAACAAGAACCCCCTACAACATTAGAACACTCATCAGAGTCCGATAATAAATTAATAGTCAATGGCGAAGCGGACGACGAACACAGTGACAAAGATGAGAAATCGAAAGATGAAACAGACGCGGAAGCGGAAACACCCACGGTAACTGACGGCGGTGTCATAGCAACAACCGTCATAGTCAATTCCGAATCGTCGCCAGAAAAACCGCAAGACACTAGCAGTAAAGATGAACAAAAGATAGCAGTAACAACAACAACGACACAATCAAGTAATGACGGTTTATTAGAACACAATTTTATACCTACGGCAACGGCCATATTTCATCCCCATCACCAAGCAGCGGCACCAACGCATTTCTTCATGGCCCCGCCGGCTGGTTTTATATCATTTGCACCACCTCCACCGTTACCGGCACCGCACCCGCATCACACCCCACATCATCCATCACACGGacagaatttattcattaatgaagCAAATGTTCAAACAAATCGAGTATTAAATAATACGGAAACTATTGAAACAAATCGGCAACGCTATATTCAGAGACGAAGACGAAGAAAAATTTCTAGATCTCAAAACGAAATTGAGAATAAATATTCCGATAATTCTGATTCGACGGGAGAAGAATTTGAAgacgaaaattataaaaattcacacATAAAACCCCAACAATTAAGTCACACCTTAAAACAAAAGGAAAACTTAGACACAATGAAAGAAAAATCGAATCCAGTACAAGTCAATGGCGATATTAAAACAGAGAAATCCGTTTCGAACAACGTTACGAATTCAAATAGTGACaattattcaaatgaaaaattggAAATTAAGAATAATGTGACTGAAGCGAAGGAAAATAATGCAGAAGATAAAATCGTACTAAATGAATTACCTGTAAATTCAATTAGAAATAATCAAATGGAAAGTACAGAGACAAcggaaaagaaaattaatagcGAGGAAAATGTTCAACAAAATGGAAACGAAAAGCCACTGGAGGAAACCAATACGaatgtaataaaagaaaataaatcaaTCGTATATAAAGTAGATGCCGAGGAATTTATTCCACGATCGATGCGACAACAAACCCCCGTAAAggattcagaaaaaataatcaatCCCGATCTACGTGCCAAATTTGAGAATTATCTAAATCGTCAAGAATTACGTCAAGATTTCCCAGTCCACAATTTTGTTCCTAACAGTGAATTTGTTTATGCCATTCCTACGAGTTCAGCGCACACAgctgaaatttatataaatcCATTAGATGGAATTAGCGACCATGTCACAAGTTTTCCACCCCATACAAAATTTATTCCACATCAACAATTTGGGTCACGAAAGCAACATACGTTTGGaaataactataataataaaaagagacAAAAGTATTCGAAAcccaattattattatagaaagAGTAATAGTGTTGAAGCTAGTACAAGTACCCAAGATGAAGAATTAAATGGTGAAACTGATTCTCAACAATCCAAGACTTTTAGTACAACTAATGAAACTGTCCAGACAGAAAAGGGTAACAAATCGACAGTATTGGAAAACAAGTCTAATCTTAATgcaataataaatgaaaacaatattaaaaagacTGAACAAAATGGTGTAACTAATCAAGGTATTGAATCAGTTTCACCTGCTAAAGAAAATAAAGAGAAACCCAAAGCAAATGAGACGAATATCTCGTCCGCGCCTACAAAGGAAAGAATAGCAGTAAATGAAAAAGATGAAAAGCCAACGATACCTTCCAAAAATTCAAGTTCTGCTATTGAAAATACTAAAGAAGTTGTTACACCATCAGTAATTCCATTAACTAACGATAAACCAAAgaataattcaataaataaagaaataccAAAACAATCACCAGCTAAAATAACTAAAACAAATACTAGAACATCACAACAACATATATCACCAGCTAATAATGTTACAGCAGTACCAAAAACTCCGAAAAATTACGCACAAATGTTACGAAAAGTTGATAATGATAAGAAAAATCAGAAAGTCACCAAACTAGATATCGCAAAAGCAGCAACTAATGCCAATATAAAGACAAATATAACTACTCCAAAATCTGCTGAACCCGTTCACAGGACTTGcccaaaacttttaaataatagtaaatcATTACCAACAACGCCAAACGAAAGTGAATGGATATCAGTACCAAGTCGAAAGAAAAGTAAAGGCAAACATTATGCCCAGAACGCGTCAAATGTATCCACATCACTCCAAGACAATTATTTAATACAAGAAACAGTTGAAGAAGTGATAAAAGTAGAATATGAGACTGAAACCAAGGAACCGGTTGTTGAAGAAATCATTGAAATAAAAGAAGTCAGAGAAATACCACTTAAAAAAGATTCTCTCGAGGAAAATAGTCAAAAGATCTCTTCAGCATCTGTAGCACCCGTGCATTTAAATAAGGCGTCACCAAGcacaaagaataaaattaaaaacactaATAAACAAAAGCGGGAACCTATTGTCAAAAAGGCTATTACCAAACCTATTGAAACGAAGACAGAAAAACATACAGAAAAGCCTAAAGTAATCAACAATGACACCGAAAATACAAGTAATAACAGTGCAAAAGTGAAAGAGGAAGTTCATAATCCAGAAAAAGCCCGAAAAGCAAGATCAAAGTCATTAAAGAAAACTCCACAGAAGGAAAGTCCAGCGTATACGTACAGCAACACAGCGATTATTGAAAGCATAGACAATTTACGTAAAATGGCAAACGAACATTCAAAAACGAATTTAGAAATATCACAGGAGATGGATCGAATAATACAACAAggtctatacaaaaatttaggTGACAAAATCAAATCGTTAGATCAAGACGAGAAATTTCTATCAGTTCTTGATACGACAAAATTAGATATTTTACCAAGATTGTTGTTTGAATCTAAGTTTCAAACAAACGATAGTGTCCCGGAATTTAATATTATGGAAACGTTAACTGAATGCCAGAAATTATTTGCATATAAAGGTGCAAAAGATATAAATGATATTAAAGATATTAAGCACACCAATGTTATTTCTAAATCTCGAGAGAATAGCATTTCAAAAGAACTGCCCGGAAAAAGTGACGAAAAAGTTGATGAAAGTGTtcaggtaaaaaaaaatgacaattttactATTTCAGATAAATCATGTAACTTAAGTGCCTCAAGTGTTAATGAAGATGAGTTGGTAACCACTGACGGCGTCGAAACAACAACAATTGCCGATAACACTGATTTAAATTTTAGCAATAATGAAACTAAGTCAGACATTAAAAATGTCGAAACTATCGATGAGATAGACTTAAAAAATATGCCTAGTACGTCTGGGTTGCAAAATAATGATGCTGACTTATCTGATAACGATGAAACATTGatatcatttaaatttgattctaaTGAAAATATTTCGGTAATTACAGAAGAACCACGTGCAAGTATCCCAAATGATTTCACCCAACCGCTTTCGGAGTACAATGACGATGGAGATGTATCAAAACATTCGCCGGATCCAGACTCATGGTCAAGCCATACAAACATGACTACAACTACCGAAGCACACAGCGTCACAACTAGTACCGAATTCACTGCCAAATTATCGTCTTCACACAAATCATTAACTGAAGTAGTTAAGGAATGGTTGCACGAAGCCAAAGAAAAAACTCCCGATATAGATGTACTTAAGTCGCCAGATAAATTGTATCGTGAAAAAAGTGCTCCGCCAAAATTATATAGACAATACTCATCAACAACGTCCTTGTCTACACTGTCAGGCGATGAATCAGAACcggaagttggactatcatcaAGTCAGCCAAAAAACGTAAAAGGCAACCCCCTATTTGCCGCATCTGCTAAATCGaatcattcatttttatcactAATGGGTGAAACGTTATTAGAGCCTATTGCCAAGAGCGGATATACATCATCAGTACCTGGCGCAGCGATTGGCGAAGATGCGTTGCTGGTGAATAGGAGGGTTGCTTCAAACAGTGATATTGACCATGTACATATTGAAGAAGAATTTTCCACAACGGCTGTTGAAGATTTTAGAACAATTGCCAAACGTCGCATCAAAGAAAATGTGGCCGTTTTTGCACGTGAATTTGTAAATACAGTAAACCCTGTCGTTGACGGTGTCAATATAAGTGAAAACGAATGTCTGgacgaatttaaaattaacacaaactaTTGTTGTGAAGTGAATGAACAAACTGATCTAAATAATGAAAACAATCTGCGCGATGAATGTCGTATCGCTCGAAGTAATCGAAAGGTAATTAACATTACAAATATTGGTGCAAacgataataataatggaaCTAATTTTATGATTCGAGGTGCGTTTGTCAGAGATGTTGGTGTGATAAAGCGAGCCGTCAGCGAAAATGGtgctatttttaataatattgtaaataatgttccaaatataaattataatgaagatgtaaataaaaatgtaaataaatcaaaatccTGTGTAGATATGAAGTTGTTATTCGTTAAAGAAAATGGAAAACGAAACGATCTATCGTCAACGTCAACATCAACATCCTCATCGTCGTCAACTGTATACACCACGTCCCGTCACAACATCATGGCTTCACGCGAAGGCTCGGAGGAATCGAAGAGATACGGAAATGTGGCACTGGACAGCATGGACGATCTGTTAGAATGTTGGGACCACGATTTATTAAACAATGAAAAGCCGTTGATTAATATGCATCATAAAAATGACGCAAAAATttgcattaaaaataatttaatgaattcCAGTAATGAAATGACAGAAGTAAGTGCAGTTTGCAAGAAAGAATTGAACACTGACATAGCCGAGAGAAAAGAAAGCGGTGAAAATGACAACGATGACGAAGTAATTGAACACTACGAATCGgtgtatggaaaaaattttgattatttagaAATACGTCAGAAAGTTTTAAACGAGTGCGAACAACAACGTGCCATGAACGGAATCATTGGAAATGAACCACCTTGTGTGGCCGGACGTGGAGCCGTCTGCTGTAGCGTTATGTGA
Protein Sequence: MFLGPGNPILSPGLVEDSINKDEYTRITTPRQDVLFKKGYLSKKKPTVVSNGDNSCAQINGGSIGSGASSNDGQMNATTNGGSCGESNPSTGYNSTTGGGTPEHHSLEENMQKAIEAVKGGMPKKTASKTYGVPRSTLQFRVSQKFVKTKPGKDPVLTEMEEKMLIDWIFQSYKKGFPVRKEDIFISVKEFLDANPRPNPFPNNYPGPGWYKLFKRRHKCLSERTSEAVTPASSRVSELDVRNWFQSVYSYLKEEHYDDILNDPERIYNGDETSFLLCPKTKKVLAERGAKNVYEVDRGQAKMALTVMFTFSASGEITPPMIIYPNKRLPKQLIHSVPKEWGIDGHKTHLDRKLSDLCNELKIILIALYPNCTRILQPADVAAFRPLKLGWQQEVINWRRTHPYEELTKEKFAPLLKLVVEKHIKTETIINGFRACGLYPWNPNNIDFSKCLGKKRNHDNLLINEDELTISFKRFKEIIGQELINDFLAQDVQSKDQNNQDKSIGYKIWCEFKKIGESLNNNNQIEIKEVDTDNKNKTSVEQNENNLEIEVDNDEELNSELRMFISNLPVILEEELLTENNALENTPVEENSKECNKENNAISHQTSNISDFLIYPKTPERKGVKNCERKPFVLTSQKWQEIEDQKKEKKLEELKRKESKKMEREAKKELAKSKLKPTGYVDYFSKVASRPTRRAVQNARERCKTVSLDVYARTNAYSCNSLRTNKHVHDSVDGGDYYDTDLEQPQQFIFHNGFVDQHGVFYVNGYDPYSVMLIGPPPPPPGQFIHPVDFYPPPSAGVPCFPQIVPSTVFNPVDSAASISSKACSTDSQTESNSPHNEIESGDTNFASSEQSQSSSSVYNHVDNESENDGIKKKQEPPTTLEHSSESDNKLIVNGEADDEHSDKDEKSKDETDAEAETPTVTDGGVIATTVIVNSESSPEKPQDTSSKDEQKIAVTTTTTQSSNDGLLEHNFIPTATAIFHPHHQAAAPTHFFMAPPAGFISFAPPPPLPAPHPHHTPHHPSHGQNLFINEANVQTNRVLNNTETIETNRQRYIQRRRRRKISRSQNEIENKYSDNSDSTGEEFEDENYKNSHIKPQQLSHTLKQKENLDTMKEKSNPVQVNGDIKTEKSVSNNVTNSNSDNYSNEKLEIKNNVTEAKENNAEDKIVLNELPVNSIRNNQMESTETTEKKINSEENVQQNGNEKPLEETNTNVIKENKSIVYKVDAEEFIPRSMRQQTPVKDSEKIINPDLRAKFENYLNRQELRQDFPVHNFVPNSEFVYAIPTSSAHTAEIYINPLDGISDHVTSFPPHTKFIPHQQFGSRKQHTFGNNYNNKKRQKYSKPNYYYRKSNSVEASTSTQDEELNGETDSQQSKTFSTTNETVQTEKGNKSTVLENKSNLNAIINENNIKKTEQNGVTNQGIESVSPAKENKEKPKANETNISSAPTKERIAVNEKDEKPTIPSKNSSSAIENTKEVVTPSVIPLTNDKPKNNSINKEIPKQSPAKITKTNTRTSQQHISPANNVTAVPKTPKNYAQMLRKVDNDKKNQKVTKLDIAKAATNANIKTNITTPKSAEPVHRTCPKLLNNSKSLPTTPNESEWISVPSRKKSKGKHYAQNASNVSTSLQDNYLIQETVEEVIKVEYETETKEPVVEEIIEIKEVREIPLKKDSLEENSQKISSASVAPVHLNKASPSTKNKIKNTNKQKREPIVKKAITKPIETKTEKHTEKPKVINNDTENTSNNSAKVKEEVHNPEKARKARSKSLKKTPQKESPAYTYSNTAIIESIDNLRKMANEHSKTNLEISQEMDRIIQQGLYKNLGDKIKSLDQDEKFLSVLDTTKLDILPRLLFESKFQTNDSVPEFNIMETLTECQKLFAYKGAKDINDIKDIKHTNVISKSRENSISKELPGKSDEKVDESVQVKKNDNFTISDKSCNLSASSVNEDELVTTDGVETTTIADNTDLNFSNNETKSDIKNVETIDEIDLKNMPSTSGLQNNDADLSDNDETLISFKFDSNENISVITEEPRASIPNDFTQPLSEYNDDGDVSKHSPDPDSWSSHTNMTTTTEAHSVTTSTEFTAKLSSSHKSLTEVVKEWLHEAKEKTPDIDVLKSPDKLYREKSAPPKLYRQYSSTTSLSTLSGDESEPEVGLSSSQPKNVKGNPLFAASAKSNHSFLSLMGETLLEPIAKSGYTSSVPGAAIGEDALLVNRRVASNSDIDHVHIEEEFSTTAVEDFRTIAKRRIKENVAVFAREFVNTVNPVVDGVNISENECLDEFKINTNYCCEVNEQTDLNNENNLRDECRIARSNRKVINITNIGANDNNNGTNFMIRGAFVRDVGVIKRAVSENGAIFNNIVNNVPNINYNEDVNKNVNKSKSCVDMKLLFVKENGKRNDLSSTSTSTSSSSSTVYTTSRHNIMASREGSEESKRYGNVALDSMDDLLECWDHDLLNNEKPLINMHHKNDAKICIKNNLMNSSNEMTEVSAVCKKELNTDIAERKESGENDNDDEVIEHYESVYGKNFDYLEIRQKVLNECEQQRAMNGIIGNEPPCVAGRGAVCCSVM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -