Bneb023983.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000007.1:16304930-16306921[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.4e-09 1.5e-06 29.2 0.0 2 39 16 53 15 58 0.88
Sequence Information
- Coding Sequence
- ATGCCAAACAACTATGTGCGAAAATCTACCAGAGGAACATGGAATGAGGCAGATCTAAAAAAGGCCATGGAAGAAGTAAATAGACAGACAATGTCTGTGTACAGAGCATCAATTGTGTATGGTATACCAAGAAAAACTTTGGAAAGAAGGGTCAAAtcgaacaaaaatattaaagggCCAATGGGTCCATCTTGTACATTTGGTACTGAGAACGAAAAGAGACTGTGTCAACATATAAAGGATATGCAATCTAAAGGCTTTCCCCTGACTATTGATGACTTAAGAAAAATCGCTTTCAGTTTCGCTGAACAATTGCATATTAAACACAAATTCAACATGGCTAGTGAAAAGGCTGGATATGATTGGGTGCaactatttttgaaaagaaatccTGGCATTTCTTTGAGAAAATCTGAGGGAGTGTCTTATGCTAGACGCCAGGGCATGAACAAAGACGAAGTAAGAGTATATTTTGAAATGCTAGAAAGAGTTCTCAGTGAAAAAGATTTGTTCGACAAACCTGGCCATGTGTTTAATATGGATGAGACAGGACTGCAGCTGAACAATCGTCCTGCACATGTTTTGGCTAAGAGAGGCTCCAAAGCTGTAGCTATGTCAACGTCAACAGAGAAAGGAGAAACAATTACAGTTATTGCCTGTTGTAATGCAGAGGGAACTTTTTTGCCACCAGCAATTATAATGAAAGGTCAGAGAAAAAAACCGGAGTTTGAAGATGGATTACCGCCTGGTTCGCGCCTTTTTATGTCGCAAAAGTCCGCTTACATTACATCTGACATTTTTTTGGAATGGATGAAGGAACAGTTTTTGCCCCGAAAACCAGCAGGAAAAGTGCTCCTATTACTTGATGGTCATTCTACCCACTGCAACTCGGTTAAGATGTTGGAGTTtgcaaatgaaaataatataatctTACTGTCAATGCCAAGCCACACTTCACATTATCTGCAGCCGCTGGATGTTGCTGTTTTTAAAGCTTTAAAGACTTATTTCTACGAAGCCTGCAGGCTGTGGACAAGGCGAAATCCAGGACGACGTCTAACCAGGAATCAACTTGGTGCCTTGCTAAATGAAGGTTGGGGAAAAGCAGCCACCCCTGCGAATGCGATTTCTGCATTTAAAGCCACAGGTGTTTATCCACTGAACCCAGGAGCTATACCTGACTCTGCGTTTGATGGAAGTATAGAGCCATCTTTTGAAAGACACCAGGTTGACCATAAGGAGACAGGATCCCATAAACCAGCAACGGTTTCCGTGGTATCAGATCCAGTTCCAAGTACGTCTGGAATTCAGATGGCTTCCATAGTATTAGATCCAGTTCCAAGTACATCTGGTACTCAGATGACTTCTGTGCTATCAGATCCATTTCCAAGTACATCTGGAACTCAACCATCATCGAACAAATCCACACCGACAAGAGTATTAAATGAAGTATCACCATTGCCTAAAAAACTTAATGAAGTCCGCAAACGTGCCAAGCAGGTAAGCCTTCTATTGACATCTGAAGACCATATTGAAAAacgtaaaatgaaagaaaaggAAAAGACAGCAAAAGAAGATAAATGTAAGAAACCGCggattataaaacaaaaacaaaagacTGGTAGAACTAAAGAAAAAAAGACTGCCAGAAAACGTAAGAGTATTCGTCGAATCTCAGACAGCAGTTGCGATGAAATACCAATAGATTTCCGCGAATCTTCTGAAAGTGAAATAGACGAAAATGAGATGGACAACTGCAGAGGCTGCGGTGAGAACTACTATAAGACACAACTCGTCGAAGATTGGCTGCAATGTAATATATGCAAGCTTTGGGTGCACGAAAACTGCACAGAGTTCGAAGACATGTGCTCAAATTgcggtaataaaaataaactgaagcTCAAAGACAGAAAGAGTAAAGGAAAAAGCAAGGAAACTACTGGCCATCTCCCCCCGAGTCCTGTGGCCATCACTCCCGGACACTCCGGGTAA
- Protein Sequence
- MPNNYVRKSTRGTWNEADLKKAMEEVNRQTMSVYRASIVYGIPRKTLERRVKSNKNIKGPMGPSCTFGTENEKRLCQHIKDMQSKGFPLTIDDLRKIAFSFAEQLHIKHKFNMASEKAGYDWVQLFLKRNPGISLRKSEGVSYARRQGMNKDEVRVYFEMLERVLSEKDLFDKPGHVFNMDETGLQLNNRPAHVLAKRGSKAVAMSTSTEKGETITVIACCNAEGTFLPPAIIMKGQRKKPEFEDGLPPGSRLFMSQKSAYITSDIFLEWMKEQFLPRKPAGKVLLLLDGHSTHCNSVKMLEFANENNIILLSMPSHTSHYLQPLDVAVFKALKTYFYEACRLWTRRNPGRRLTRNQLGALLNEGWGKAATPANAISAFKATGVYPLNPGAIPDSAFDGSIEPSFERHQVDHKETGSHKPATVSVVSDPVPSTSGIQMASIVLDPVPSTSGTQMTSVLSDPFPSTSGTQPSSNKSTPTRVLNEVSPLPKKLNEVRKRAKQVSLLLTSEDHIEKRKMKEKEKTAKEDKCKKPRIIKQKQKTGRTKEKKTARKRKSIRRISDSSCDEIPIDFRESSESEIDENEMDNCRGCGENYYKTQLVEDWLQCNICKLWVHENCTEFEDMCSNCGNKNKLKLKDRKSKGKSKETTGHLPPSPVAITPGHSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00238743; iTF_00238744; iTF_00049837; iTF_01527084; iTF_00238740; iTF_00281085; iTF_00159762; iTF_00722978;
- 90% Identity
- iTF_00238740;
- 80% Identity
- -