Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000002.1:70905002-70907743[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 6.8e-09 1.4e-06 29.3 0.0 1 38 11 49 11 55 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	6.8e-09	1.4e-06	29.3	0.0	1	38	11	49	11	55	0.92

Sequence Information

Coding Sequence: ATGACAAGAAATTATTCAAGATTCAAATATTCTGAAGAAGCCCTACTCACAGCTTTAACTGAAATTAAggaaaagaaaattactttaaatcaagcttctataaaatattcaataccGAAAGGAACCCTATATAATAAAGTTAAAGAATTAGTGCCTTTAAATCGTAAAATGGGACCTGATTCCATCCTATCTCCAGCAGAAGAGAAAAGAATTGAAGACTGGATTATATCGAAAGCAAAGCTAGGGTTTCCTATGCATACTGAAACAGTTAAAGATGCAGTACAAAGTATTCTAAAAGCAGCTCAAAAGGATAATCCCTTCCAAGACGATCGCCCTGGGAGAAAATGGATGTCTTTATTTCTGAGAAGACATCCCGACATCCATAAGTGTCATACAGAAGCTATATCTAAAGCGAGAGCTTCTGTAACTGAGTCAAGTATTAGGCAGTGGTTTAAGGAAGTAGTTGAATATGTTAATCAAGAAGAATGTCCAGATGTCCTGAATGATCCATCCAGGATATTCAACGCAGATGAGACCGGTGTCCAGTGCTGCCCAAAAAATGGAACAGTATTGGGGCCAAAAAGATTTAAGAACATGTATGCAGTCAGTAATGGAAATGAAAAAGAGTCTATAACAGTTCTATGCACATTTTGTGCTAACGGACTAACGATTCCACCAATGATAGTTTACCCTTATAAGCGGATTCCAACGTACCTTGCAAATACTTTACCTGACACTTGGGTGGTCGGACGTTCAGATTCAGGTTGGATGACATCTTCCACCTTTTATGAATATGTGGTGAATACATTCTATGATTGGCTTCTTGAAAGAAATGTTACATTTcccgtaatattttttttagacgGCCACAAATCACACATCAGTCTTGAACTAAGTGACTTCTGTGCCGAAAAGCGAATTTTGCTTTATTGCTTACCTGCAAACGCTACTCACATCCTCCAACCCTGCGATGTTTCTATTTTTAAACCTCTAAAAGAAGCATGGAAAAAAGAAGTGATACTACACAGACAAAGAACATGTGCTTCAATAACAAAACAGAACTTTGGTGAGTTGTTTACAAAAGCCTTTGACAAAGCCATAAAAGCCTCTATTGTGATAAATGGATTTAAAAGCTGTGGGTTATATCCTTTCACACCAGAAAATGTTGattattcaaaatgtttatCTAACCGAAGACAAGACATTCATAAAGATAACTCCTTGGCTGCATCTAAGCTTACTCAAGAAGACTTTCTTAGTGCAGTTAAGGTAATAGAAAACGTAGTTGGAGCAGACACTTCAAAGAAGTTCCATGAAGCCCTTAGAATGGGCAGTGAAAATGTGGAGACAGAACTAAATGTGTTTCAAGTTTGGAGTAAATGCCTAGACGAAATTCAGCGAAGAGGACGTGAACGTacagaagtgcaacaaaatgaTACAACTGATGCAAATGTAGACCTACTTGATCTGGATCCAATCGAAGATGACTTATCTTTACTTGACGTTAGCTTAAAGTCGGTGGCTCCAATGACTCATTTAGATTTGAATATTTCAGATCCAAGCTTAATAAATGAGACTGAAATTGAAAACTATGCCGACTGTTTTGTATCTGAGGCACCTACAAATGATATTATAACAAGACCTGCCAGTGAAGAAgtttacaatataaataatatgccACTGGAAATTGATGGAATAGTTTACGAACTTAATGTTTCAGCCACACATTCTGATGTGAATACATTAATTCCAAACATAGGCCTAAGTgacgaaaatgaaaatatactCAAAGATATAAGTAGGACTATTATTAACGGGGATAATATTCAGACTGAAATTGAAAGAGAACATGATAGACTTGGAAGTTTCAGTGACAGCAATCAACTCTCTGATGTTGATAAAtctaataaagaaaatttaaggagtgaaaattatgaagaaatcaGTAACAAAGAAGTGGACAATGTAGTAAAAGAATACTCGGAACATGAAAAACCGGATGTAGATCACCGTACTACTGAACTATCTAAAGAGGCCACAAACGTAGAAGTTGAAAagatgaaaaaaagaaatgtaaTTTCAGAAGATGTTTGGGAAAAACACTTACACTGGCCTAAACGGGTAGAAAAAAAGggtaaaaatatatctttaacAGAAAAAATGCCATATGCAATCACTTCAAAAAAATGGAGGGACATGATGAAGAAAAAAgaacaagaaaaagaaaagaaaaatctagaaaaattagaaaaacagaaaaagaaaGAACTGTTaagagaaaccaaaaataaaaaaagaacacaGACAAATTTGTCTAGTGACAAGAAGAAGCTCTCAAAAACTTGTGAATCTATTTCTGTATCTGACACTAACTACACTGAAACTGAAGAAAACAAAGTGAATGAAATAAATGTCAATAATGAAGGCTTGGAAGCTCTTgataaaaattcatttgtaaTCGTAAATTATGAGGGAGAATTTTTCCCAGggacaataattaatattaataaagaaTTAAATGAATACGAAATAAGTGTTATGACAATGTCTGGCCCACATTCCTGGAGGTGGCCTGAAAGGCCAGATGTAATCTGGTATAAAAAAGAAGACATTATGGGTAAGATAAAACCACCACAACCAGTAAATTCTAGGGGCGTGTGCAGTGTACCCGAGGTAGAGGCCCTACGCAAGAATAAAATCCAGAGTTTTAACAGTGGCATTGGTGAAGTGCTGGAGAAATGA
Protein Sequence: MTRNYSRFKYSEEALLTALTEIKEKKITLNQASIKYSIPKGTLYNKVKELVPLNRKMGPDSILSPAEEKRIEDWIISKAKLGFPMHTETVKDAVQSILKAAQKDNPFQDDRPGRKWMSLFLRRHPDIHKCHTEAISKARASVTESSIRQWFKEVVEYVNQEECPDVLNDPSRIFNADETGVQCCPKNGTVLGPKRFKNMYAVSNGNEKESITVLCTFCANGLTIPPMIVYPYKRIPTYLANTLPDTWVVGRSDSGWMTSSTFYEYVVNTFYDWLLERNVTFPVIFFLDGHKSHISLELSDFCAEKRILLYCLPANATHILQPCDVSIFKPLKEAWKKEVILHRQRTCASITKQNFGELFTKAFDKAIKASIVINGFKSCGLYPFTPENVDYSKCLSNRRQDIHKDNSLAASKLTQEDFLSAVKVIENVVGADTSKKFHEALRMGSENVETELNVFQVWSKCLDEIQRRGRERTEVQQNDTTDANVDLLDLDPIEDDLSLLDVSLKSVAPMTHLDLNISDPSLINETEIENYADCFVSEAPTNDIITRPASEEVYNINNMPLEIDGIVYELNVSATHSDVNTLIPNIGLSDENENILKDISRTIINGDNIQTEIEREHDRLGSFSDSNQLSDVDKSNKENLRSENYEEISNKEVDNVVKEYSEHEKPDVDHRTTELSKEATNVEVEKMKKRNVISEDVWEKHLHWPKRVEKKGKNISLTEKMPYAITSKKWRDMMKKKEQEKEKKNLEKLEKQKKKELLRETKNKKRTQTNLSSDKKKLSKTCESISVSDTNYTETEENKVNEINVNNEGLEALDKNSFVIVNYEGEFFPGTIININKELNEYEISVMTMSGPHSWRWPERPDVIWYKKEDIMGKIKPPQPVNSRGVCSVPEVEALRKNKIQSFNSGIGEVLEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -