Bneb023346.2
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- clz9
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000007.1:12803018-12804751[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.9e-09 9.6e-07 29.8 0.0 4 37 18 51 15 58 0.89
Sequence Information
- Coding Sequence
- ATGGTGCGAACGTACAAACGTAAAACGGACAGAAGTAACATCGACGAAATTGCTATGGCTTCTGCAATCTCAGATGTTCTGGAAGGCAAGTTATCAATTAGAAAAGCAGCTGATAAATACAATTTGAAAACTGCTACTCTACAACTTAGGATTGAAAATAAGAAGAAAGTGGAAGAAAAGGACGTAAGTTATTCATCTAAGTATACCTCTCAACAAGTATTTACTACTGAACAAGAAAACCAATTAAatgaatacataataaaatgcaGTAAAATGCATCATGGTCTTACTTTAACTCAAGTACGACAACTTGCCTACCAATTCGCCACAAAATTAGATTGCAATTATCCCAAGTCTTGGGATGAAAATAAGAGTGCCGGCTTAGATTGGATATCTGGTTATCGCAAGCGGAATTCTAATATTAGTTTAAGGAAACCCGAAAACACAAGTGTCGCTCGATCATTTTCTTTCAATAAAACtgctgtagaaatattttttaataatctagAAGATGTTCTATCAAGATACAACTTTACAGCTGatcgaattattaattttgatgaaaccgGTATTACGACGGTCTTAAATACTCCAAAGATATTAGCAGAAAAGACACAGCGCCAGGTCGGCCAAATTGTTTCTGCAGAGAGAGGAGAACTGGTAACTTTTGGAGGAATCATAATTGGTACTGGCAATACTATTCCACCCGTTTTCGTATTTCCCCGAGTTCGTtataaaagtcattttttgaatGGTGCACCAGAAGGATCTTTAGTTTACTTATCGTTTCCTCCGCATACGTCCCACAAACTCCAGCCTCTTGATGTTGGTGTCTTCGGTCCGTTCAAGGCAAAGCTTAAGATAGCTTTTAACGACTGGCACGTTAATCACCCTGGAAAGGCGTTAACTATTTACGACATTCCAGCTCTTGCTAAATTGGCTTTTTTTGAATCGTTCActgcaaaaaatattacaagCGCATTTGCAAAACCTGGAATCGTGCCATTTAATAAATTAGCATTTTCCGATGAAGATTTTTCTCCCTGTGAGGTTTATAGCAACCAAGAATCACAAGGTTCTTTTGTAAGCAATTTAAATTCAGCTAATTCTCTCGATCTTGAGGATACAATAATGAATGTGCAATGTGTGACGCCTACTCCCGGTAGAGAATCAACAAATACTACTAATAATGCTGAATCGCTAAATATGCCATCAACATCAAGAATTTCCAAGTTAGGAACCGGAATTTCGACATCAAAATTATGCATAACCCCTGAAGCTGTAAGACCTTACCCAAAAATCAACCATAAGAGCCAAactaaaaaaggaaaagagaagGGTAAGTCGAGGATCTACACAGATACTCCAGAAAAGCAAAGAATAGAAGAACTACAGAGAGCTAAAGATGAAGCAAACTTGAAAAAAGAACAAAGAAAGCAAGCAAGAGATTTGAAAGCTGCTCAAAATTTGTCAGTCAATATTGCAAATCCCATTAAGAAACCAACCAGGAAGAATTCAACAGCTCGAAATCTCGagaaagaatatatttcaaataaaaactag
- Protein Sequence
- MVRTYKRKTDRSNIDEIAMASAISDVLEGKLSIRKAADKYNLKTATLQLRIENKKKVEEKDVSYSSKYTSQQVFTTEQENQLNEYIIKCSKMHHGLTLTQVRQLAYQFATKLDCNYPKSWDENKSAGLDWISGYRKRNSNISLRKPENTSVARSFSFNKTAVEIFFNNLEDVLSRYNFTADRIINFDETGITTVLNTPKILAEKTQRQVGQIVSAERGELVTFGGIIIGTGNTIPPVFVFPRVRYKSHFLNGAPEGSLVYLSFPPHTSHKLQPLDVGVFGPFKAKLKIAFNDWHVNHPGKALTIYDIPALAKLAFFESFTAKNITSAFAKPGIVPFNKLAFSDEDFSPCEVYSNQESQGSFVSNLNSANSLDLEDTIMNVQCVTPTPGRESTNTTNNAESLNMPSTSRISKLGTGISTSKLCITPEAVRPYPKINHKSQTKKGKEKGKSRIYTDTPEKQRIEELQRAKDEANLKKEQRKQARDLKAAQNLSVNIANPIKKPTRKNSTARNLEKEYISNKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00238703;
- 90% Identity
- -
- 80% Identity
- -