Bneb023031.2
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000007.1:10935908-10939905[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.3e-11 1.6e-08 35.5 0.0 4 41 15 52 13 54 0.92
Sequence Information
- Coding Sequence
- ATGAACAACgaaggcaaaaaaattttaaaatatgagaAGAATGATATGAAGAAAGCTATTGAAGCTGTTAAAAACAATCAAGTTTCAGTTCGCTCTGCAGCGAGACAGTTTGGAGTACCAAGGACAacattattatcaaaaattaatggAATTTATCCTGAAGTTTGCAAAATGGGACCAAAAACAAATCTTTCCGAGGAAGAAGAAAGTCTTCTTGTTCAGTGGATATTTCACGTCGCGAACAGAGGCTTCCCTGTTACAAAGGATCATTTATTGAATTCCGTGAAGCTATTATGCTCTCAGTTAAAacgtaaaacaaatttcaataatGGAAAACCAGGCAGTAAATGGTACCAATGTTTCTTGAAACGACATCCTGAATTGTCAGAGAggttgtctcaaaatttaacaaaGGCAAGATCTAATGTATGTGAAGGCAAAATTCGCAACTGGTTTAAAGAAATCAAAagttttgtaaaagaaaataacTTGGGAGATATTTTTAATGATCCTAAAAGGGTATTCAATGCTGATGAAACAGCTTTTTTCCTGTCTCCTAAAGGACAAAAAGTTTTGGTAAAGAAGGGGACAAAGTTAGTTTATTCTTTTACAAATAATGACGATAAAGAATGTGTTACTACTTTATTGACTACAAATGCTTTTGGCATGTTAGCACCAACGATGGTTGTTTACCAATACGATAGACTGCCTCAAAATATAGTCGATAAAATACCTGAAGATAATTGGGTTATCGGGAAAAGTAAATCTGGCTGGATGACTggtgaaactttttttgaatacatcGCTAATGGATTTCATCCTTGGCTTGTAAAACAAAACATAACTTTACCTGTTGTACTGTTTGTCGACGGACATTGCAGTCATTTAACCTTCTCAGTTTCAGAGTTTTGTTCCAAAAATGGCATCATTCTTATCGCACTCTTACCGAACTCTACACATATTCTCCAACCGTTGGATGTTGCTGTTTTTAGACCGATTAAAAATGACTGGAAAAAGGCAGTTTATCAATGGAGGATAGAAAATGAGGGAgcaaaactaaaaaaagaagATTTTGCACCACTTCTtgataaagtattaaaaaatttgaaaattgaaactatTACAAACGGTTTTAAAAGTTGCGGCCTCTGTCCGTTGAATGAAGAAGCTAttaactatcaaaaatattttaaaactaataataatgaCATTATTGTCAATAACAGCACTCAAAAGGAACCTATAGAGGTGCTTAAAGTTCATTTGAATTGGTTAGAGGGTGAAATAACCCAAGAGAgactaattcaatttaaaaataataatgtggaAACTGAAGATTTATCATTATATCGGTtatggttaaaattaaaaaatatagtcaACAATGAGAAGCCTTTAGAAAATGAAAATCAAGGAGAAGAAATGAGTATATTTCCAATTACAGAAGCCTTAGGAAATAATACTGGAGAAATAGTGCTTGAATCTACCGAAAACGATGAGCATTTAATATCCGAAGTTAAAGAAAATAGTCCTGAAAAAATACACCAGACTCAAGAAAATATTCCACAAACAATACTGAAGTCTCAAGAAAATATACCACAAATAATCGAAAATACTGAAGAAAAGGATAACAAAGAAGTATACGTTGAAGTTCCAAacattttaaaaagaaatttagtgCCTAGTGCATTCAAACTGGGGTTAGATAGAGATTTTATATTCCAACAAGATAACGACCCCAAGCATACTGCTTGGGTTGTTCGTCATTGGCTACTTTACAATACACCGAAAATGCTCAATACGCCACCGCAATCACCAGATCTTAATCCCATCGAGCATTTATGGGCGTTATTGAAACGAAAAATTGAGAAACATAAGATTTCTAGTCGAGAAGATCTGATTAAGTACCTCAGAGTGGAGTGGAATACAATAACATCTGCTGAAACTGAGAAATTAGTTAAATCCATGCCAAATCGTTTAAAagcagtaataaaaatgaaaggatATCCCACAGAATACTga
- Protein Sequence
- MNNEGKKILKYEKNDMKKAIEAVKNNQVSVRSAARQFGVPRTTLLSKINGIYPEVCKMGPKTNLSEEEESLLVQWIFHVANRGFPVTKDHLLNSVKLLCSQLKRKTNFNNGKPGSKWYQCFLKRHPELSERLSQNLTKARSNVCEGKIRNWFKEIKSFVKENNLGDIFNDPKRVFNADETAFFLSPKGQKVLVKKGTKLVYSFTNNDDKECVTTLLTTNAFGMLAPTMVVYQYDRLPQNIVDKIPEDNWVIGKSKSGWMTGETFFEYIANGFHPWLVKQNITLPVVLFVDGHCSHLTFSVSEFCSKNGIILIALLPNSTHILQPLDVAVFRPIKNDWKKAVYQWRIENEGAKLKKEDFAPLLDKVLKNLKIETITNGFKSCGLCPLNEEAINYQKYFKTNNNDIIVNNSTQKEPIEVLKVHLNWLEGEITQERLIQFKNNNVETEDLSLYRLWLKLKNIVNNEKPLENENQGEEMSIFPITEALGNNTGEIVLESTENDEHLISEVKENSPEKIHQTQENIPQTILKSQENIPQIIENTEEKDNKEVYVEVPNILKRNLVPSAFKLGLDRDFIFQQDNDPKHTAWVVRHWLLYNTPKMLNTPPQSPDLNPIEHLWALLKRKIEKHKISSREDLIKYLRVEWNTITSAETEKLVKSMPNRLKAVIKMKGYPTEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00238722; iTF_00238661; iTF_00238662; iTF_00238663; iTF_00238664; iTF_00238666; iTF_00238668;
- 90% Identity
- iTF_00238661;
- 80% Identity
- -