Bneb036223.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000021.1:1602291-1602824[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8e-11 1.6e-08 35.5 0.0 1 40 11 49 11 54 0.90
Sequence Information
- Coding Sequence
- ATGTCTCTTTCGGAACCAatactacaatactcagaggaAAGACTTGTGCAAGCTTTAGATGCTATTAGAAACGGCATATCGATTAGAGAATCTAGCAGAGTTCACGATGTTCCTCGAGGCACATTGCAAGATAGGCTTCATCTTCGAGTACCTAAAGGTCCTAGACGAATGGTACCTGATTCTGTTTTGTCCAAACTGGAGGAAACAGAAATTGCGAACTGGCTGGTGACTCTTGCAACATGCGGATTTCCGCTAAAACCAGATACTCTTTTAAATACTGTTCAAAATATTATGCTCGAAGATGGCAAAACTAATCCTTTTGTAAATGGCAGACCAGGGAAGAAATGGTTGCAGTCTTTCTTCAGAAGAAATCTACAGCTTTCGTTAAAGACACCAGAAGCTATTTCAAAAGGAAGAGCAGTTGTTACCGAggaaagtattaaaaaatggtTTGATAACTTGAAAGAATACCTGACTTCTATTCACGCACTGGATGTGTTAGATGACCCTCAAAGAATATTTCAACGGCGATGA
- Protein Sequence
- MSLSEPILQYSEERLVQALDAIRNGISIRESSRVHDVPRGTLQDRLHLRVPKGPRRMVPDSVLSKLEETEIANWLVTLATCGFPLKPDTLLNTVQNIMLEDGKTNPFVNGRPGKKWLQSFFRRNLQLSLKTPEAISKGRAVVTEESIKKWFDNLKEYLTSIHALDVLDDPQRIFQRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00238655;
- 90% Identity
- iTF_00238655;
- 80% Identity
- -