Bneb027674.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000010.1:13485538-13487361[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-10 2.9e-08 34.7 0.0 2 39 18 55 17 59 0.94 2 2 1.5 3e+02 2.6 0.1 12 24 137 150 135 151 0.78
Sequence Information
- Coding Sequence
- atgcCTACCCGTTATAAAAGGAATAGCGGCTCAACCCGAGGAAGCTGGAGCCAGGAAAACCTAATGAAAGCTATCAAAGCTGTAGAGAGTAAAGAGATGGGAGTCAACGAGGCAGCTCGGATGTTTGAGGTACCTCCTACTACTTTAAAGAGACGTATTAGGACCGGTGATGTGTCTGTAGGTCGGCTTGGTCCGTCATCAGTTCTAGGGGAAGAGGTCGAGAAAAAAATAGTGGCTCACATAAAAAAGTTGCAATCAAGGGGTTTCACTCCGACAAGGGAGGCTGTCCGCTCAATGGCATTTAAATTAGCAGAATACCTTAAAATTCCGCACAATTTTAACAGAGATCATAAAAAAGCTGGTTATGATTGGTTAGACAGTTTCCTCAATCGCAATCCTGAGTTATCCGTTAGAAAAGCAGAAGGGGTCTCAGTGAATAGAGCGGCAAGGATGAACAAGGAAAcagttgaaaaatatttcaaaatgctGGAAGAaatattgaatgaaaattttttatttggtaaaCCAGGGAACATTTTTAATGTGGACGAGAGTGGCCTTCAATTGAATAATAAACCAGGTCAGGTCATTGCTGAGAAAGGTTCAAAAAATGTGAGCGTCATTACCAGTGGAGAAAAAGGTGAAACCATTTCTGTTGTCGCATGCTGCAACGCTGAAGGTTCATTTCTTCCTCCATTCTGCATTTTCaagggaaaaaataaaaaaaaggagtTTTCCGATGGGATGCCACCAGGATCAGAGGTAGTAATGAACGAAAAGTCTGCCTACGTTAcctcagaaatatttttttcttgccTGAAGGACCACTTCGTTCCAAGAAAACCATCGGGGAAAGTCCTTCTAATTTTGGACGGTCATTCATCACATTGTTCTTCTGTGGAAATGCTGGAGTTCGCAGAGCAGCAGGAGATTATTCTTTTAAGCCTTCCAAGTCATACAACTCATTTCCTGCAGCCACTTGACCGGTCGTTTTTCAAATCCCTAAAATCGTTTTACAATGCAGCATGCAACACCTTCGTGAACAACAACCCCGGCAGGCAGATAACGAGGCTGCAGTTTGGCACGTTGTTGGGCTCTGCTTGGGCGAAAGCTGCAACAGTTGAAAATGTTTTATCAGGATTCAAAGCTACTGGGATCTACCCATTCGACATCACGGCTATTCCAAACCATTCATATCTTATAACTGTTGAATCAAATAAAGCTTCGGTTGTAGATGGGTCACCCACGAACCAACAAGCTTCCGAGATGCCTACAACCGCTTCAGCAGTTGGAAAACCAAATAAAGTTTCTGTTGTAGATGGATCGCCCACGAATCAACAAGCTTCCGCGATGCCTACAACCTCTTTAGCAGTCGAGGAACCTCATCAAATTTCCCCCACTAAAGCGTTAAATGCTATTTCACCCGTCCAAGAAGTTAAAAGGAAAGTAACTTCAAGAGGCGCTGCTACCAGCGTCTCTAGAATTTTAAAttccatagaaaatataaaatcgcAAAGTGAAAAGTGCAAGAAGAAAATCATTTCTAAGGAGACAAACACAAATAAAGCGAAGAGAAGGAAAGTGGATGAATCGTCTAGCTCCGAGGAAGAGGAGATCGTACTACAGGACACGGACGACGATTCGTACCTAGAAGATTGGGACGAGAACGTGTGCGCTGGTTGTGGAGAACACTATGAATCCACAAAGAGCAAAGCCGACTGGATTCAATGTGTTAAATGTAGTCGGTGGGTGCACGAAACGTGCACTAAATATGAAAACAGCTGCGACGCTTGTGGTAAAATTCAAGAAAGAAAaaggaaataa
- Protein Sequence
- MPTRYKRNSGSTRGSWSQENLMKAIKAVESKEMGVNEAARMFEVPPTTLKRRIRTGDVSVGRLGPSSVLGEEVEKKIVAHIKKLQSRGFTPTREAVRSMAFKLAEYLKIPHNFNRDHKKAGYDWLDSFLNRNPELSVRKAEGVSVNRAARMNKETVEKYFKMLEEILNENFLFGKPGNIFNVDESGLQLNNKPGQVIAEKGSKNVSVITSGEKGETISVVACCNAEGSFLPPFCIFKGKNKKKEFSDGMPPGSEVVMNEKSAYVTSEIFFSCLKDHFVPRKPSGKVLLILDGHSSHCSSVEMLEFAEQQEIILLSLPSHTTHFLQPLDRSFFKSLKSFYNAACNTFVNNNPGRQITRLQFGTLLGSAWAKAATVENVLSGFKATGIYPFDITAIPNHSYLITVESNKASVVDGSPTNQQASEMPTTASAVGKPNKVSVVDGSPTNQQASAMPTTSLAVEEPHQISPTKALNAISPVQEVKRKVTSRGAATSVSRILNSIENIKSQSEKCKKKIISKETNTNKAKRRKVDESSSSEEEEIVLQDTDDDSYLEDWDENVCAGCGEHYESTKSKADWIQCVKCSRWVHETCTKYENSCDACGKIQERKRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -