Bneb024120.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000007.1:17065747-17083102[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-08 4.1e-06 27.8 0.0 2 39 16 53 15 58 0.88 2 2 2.7e-11 5.4e-09 37.0 0.1 1 43 988 1030 988 1031 0.92
Sequence Information
- Coding Sequence
- ATGCCAAACAACTATGTGCGAAAATCTACCAGAGGAACATGGAATGAGGCAGATCTAAAAAAGGCCATGGAAGAAGTAAATAGACAGACAATGTCTGTGTACAGAGCATCAATTGTGTATGGTATACCAAGAAAAACTTTGGAAAGAAGGGTCAAAtcgaacaaaaatattaaagggCCAATGGGTCCATCTTGTACATTTGGTACTGAGAACGAAAAGAGACTGTGTCAACATATCAAGGATATGCAATCTAAAGGCTTTCCCCTGACTATTGATGACTTAAGAAAAATCGCTTTCAGTTTCGCTGAACAATTGCATATTAAACACAAATTCAACATGGCTAGTGAAAAGGCTGGATATGATTGGGTGCaactatttttgaaaagaaatccTGGCATTTCTTTGAGAAAATCTGAGGGACTGTCTTATGCTAGACGCCAGGGCATGAACAAAGACGAAGTAAGAGTATATTTTGAAATGCTAGAAAGAGTTCTCAGTGAAAACGATTTGTTCGACAAACCTGGCCATGTGTTTAATATGGATGAGACAGAACTGCAGCTGAACAATCGTCCTGCACATGTTTTGGCTAAGAGAGGCTCCAAAGCTGTAGCTATGTCAACGTCAACAGAGAAAGGAGAAACAATTACAGTTATTGCCTGTTGTAATGCAGAGGGAACTTTTTTGCCACCAGCAATTATAATGAAAGGTCAGAGAAAAAAACCCGAGTTTGAAGATGGATTACCGCCTGGTTCGCGCCTTTTTATGTCGCAAAAGTCCGCTTACATTACATCTGACATTTTTTTGGAATGGATGAAGGAACAGTTTTTGCCCCGAAAACCAGCAGGAAAAGTGCTCCTATTACTTGATGGTCATTCTACCCACTGCAACTCGGTTAAGATGTTGGAGTTtgcaaatgaaaataatataatctTACTGTCAATGCCAAGCCACACTTCACATTATCTGCAGCCGCTGGATGTTGCTGTTTTTAAAGCTTTAAAGACTTATTTCTACGAAGCCTGCAGGTTGTGGACAAGGCGAAATCCAGGACGACGTCTAACCAGGAATCAATTTGGTGCCTTGCTAAATGAAGGTTGGGGAAAAGCAGCCACCCCTGCGAATGCGATTTCTGCATTTAAAGCCACAGGTGTTTATCCACTGAACCCAGGAGCTATACCTGACTCTGCGTTTGATGGAAGTATAGAGCCATCTTTTGAAAGACACCAGGTTGACCATAAAGAGACAGGATCCCATAAACCAGCAACGGTTTCCGTGGTATCAGATCTAGTTCCAAGTACGTCTGGAATTCAGATGGCTTCCATAGTATTAGATCCAGTTCCAAGTACATCTGGTACTCAGATGACTTCTGTGCTATCAGATCCATTTCCAAGTACATCTGGAACTCAACCATCATCGAACAAATCCACACCGACAAGAGTATTAAATGAAGTATCACCATTGCCTAAAAAACTTAATGAAGTCCGCAAACGTGCCAAGCAGgaaaagaCAGCAAAAGAAGATAAATGTAAGAAACCGCggattataaaacaaaaacaaaagacTGGTAGAACTAAAGAAAAAAAGACTGCCAGAAAACGTAAGAGTATTCGTCGAATCTCAGACAGCAGTTGCGATGAAATACCAATAGATTTCCGCGAATCTTCTGAAAGTGAAATAGACGAAAATGAGATGGACAACTGCAGAGGCTGCGGTGAGAACTACTATAAGACACAACTTGTCGAAGATTGGCTGCAATGTAATATATGCAAGCTTTGGGTGCACGAAAACTGCACAGAGTTCGAAGACATGTGCTCAAATTgcggtaataaaaataaactgaagcTCAAAGACAGAAAGAGTAAAGGAAAAAGCAAGGAAACTACTGGCCATCTCCCCCCGAGTCCTGTGGCCATCACTCCCGGACACTCCGGGTGCATTATGGTCCAAAAGAAATGTATTTTGTGCGGCAGAACACGGGAGGACGATGTAAAGCTGCACAGATTCCCGAGAGATGAAGCAAgATGCCGTTTATGGCTTCAAAAGTTGAATATGGAGGAGACATGTCCTAAATTTGCCTATGATAATTATGTCCTTTGCCAACTACATTTCGACGACTCCATGTACAATCCTCTTGCTTCCAGAATATTGCGTCCTTTGGCTTCTCCAATTCCTGTTGAACCTGTGGTAGACCCGGTTCCTGCTCGTCCAGTTTCTCCTGAACCTATCCCTAGTACATCCACTTGCTCCGATCCTAAGCCTGGTACATCCAGATCCTCTGATATCACTCCCACTGTCCCACCTGAGGATTTGTTTTCAGGCATGTCGCCGATCACCCAGCAGTTTTTGTTGTCACAAATGAAAAATGCGAAGAGAGATGTCCATGGTCGACGATGGAGCACATCAGATAAAGCAGCAGCTCTAGCCCTCTTTAAAAAATCCCCGAAAGCATATGCCTTTTTGCGTAAATTCCTACCCTTCCCGTCTCCTACAACACTCCGCACACATTTAGCGCGCATTCCCTTCAGTCCTGGTATAAATCCCATCCTATTTGAACAATTGTCAAAATCAATTTCCCATCTGAAAAAAGAGGATAGAATCTGCTGCTTGCTTTTTGATGAAATGGCGATCCGACCTCACTTAAATTACGACGACGCCAACGATACCATCTATGGCTTTCAAGACTTCGGTAGTGGGCGTCGGATTAACGAAGTCGCCAACAGCGCCCTAGTTTTTATGGCGCAGGGGCTTCGTAAACAGTGGAAGCAGCCTGTCGCTTATTATTTTTCAAGGGGGGGTGTCAAAGGTGTGGATTTAGGGTCTATTATTCGTGAAGTCTTAAGTGCCTTGAACTCAGTCAATTTAAACTGTGTCGCGACAGTTTGTGATTTGGGTTCAACTTTTGGTTTATGGTCTATGCCAAACGTATACCAAAGAAAATCTGTAAGTGTTCGTGGAAATTGGACTGAGGAAGCATTGCAAACGGCTATGCATGCTGTGCAAAAAGATGGTATGTCTGTTTATGCTGCGGCCAATCTGTATAGCATACCTAGGAAAACCTTGGAAAGAAGACTAAAAAAGCAAAATGATAAAAAGGGACCCATGGGACCATCAGGTGTTTTTGGtcctgaaaacgaaaaaaaacTTTCCTGTCATATAAAACAAATGCAAAAAAGTGGATTTCCTTTGACGATTGATGACGTTAGAAAAATTGCTTATCAGTTTGCCGAAGAATTGAAAATACAACACAAATTTAATCGAACTTCCGAAAAAGCTGGATATGTCTGGCTTCAATCGTTTTTGCGACGAAATCCTGAAATAACATTAAGGAAATCTGAGGGAGTTTCGTTTGCTAGATCTCAGGCTCTCAATAGATCAGAGGTGAAAGGATATTTTGAGCTTCTCGAGAaaactttaaatgaaaataatctcATGAATAAACCAAACTCCATTTTTAATATGGACGAAACGGACATGCAATTAAATAATCGTCCAGGGCATGTTCTGGCAGAAAAAGGATCAAAAGCGGTATCTATGGCCACTTCGACGGAAAAGGGAGAAACAATAACGGTTATTGGATGCTGTAATGCTGAGGGAAATTTCTTACCGCTCACCTGTATAATCAAAGGAAAAAATAAGAAACCAGAATATGAAGATGGAATGCCTCCTGGATCTATAGTTTTTATGTCGGAGAAATCAGCCTATATAACTtcggaaatatttttagaatggttaaaagtacaatttgtaCCCAGAAAGCCTCCTGGTaaagttttattaattctaGATGGACATTCCACTCACTGCAATTCGGTTGCCATGCTGAATTATGCCAAAGAAAATGATATTATTCTATTGTCATTACCCAGTCATACTTCCCACTATTTACAGCCTTTAGACCGTACAGTTTTCAAGCCACTAAAAACGTACTATTACGAGTTTTGTAGACTTTGGATCAAACAGAATCTAGGACGCCGTATTACAAGATTGCAGTTTGGTATGTTGCTGAATCAAGCTTGGGGAAAAGCAGCCTCCGTAGAAAATGCCATATCTGGGTTCAGAGCGACAGGTGTTTATCCTTTTAACCCAGAATGCGTACCGGATTATGCATTCACAAACGAATCTTGTGAAACGGCAAACAATCCTCGTGATAAAACTGAGTCCCCAAACAACCCTCAGAATGCTCAAAATGCCCCTGAAATATCAGACGAGGTTGTCGAACCAAAGCCAAGCACTTCACAAGACACTGAAATGGAAAAATTCACTCcgtcaaaaattttgaaacaaatttcacCTATTCCACAAAAACTTACTGAAACGCGTAAGCGTGCAAAACAACTTGGTATCCTTTTGACTTCAAAAGAGCATATAGAAAATAGAATAGCCAAAGAAGATAAAAAACTTGTAGCGGAAAAGAAGGCTAGcatgaaaaatattgaaaagtcTGCTATCAAACAAGAGGAAACCAAAAAGAAAGATATAAAGAAGACTTATAGTAATAAAGTAATTGTAAGAAAGCGAAAGGCTATAGTTAGGATTTCAGATTCGGAGACTAGTAGTAATGAAGGAGAATCAATCTCAGAGATCCATAAGAAAGAAGAGAATATTTGCCGCGGTTGTGgggaaaattattacaaaaccaaGTTAATAGAAGATTGGCTACAATGTGTATTATGCGACTTATGGGTACATGAAAACTGCACGGAATTTGATAACATGTGCTCTATTTgtggaaataataaaaagaaagagCTCAGGGAAGCcggaaaaaaaggaaaagggaAGAAAACCATCAAGTAA
- Protein Sequence
- MPNNYVRKSTRGTWNEADLKKAMEEVNRQTMSVYRASIVYGIPRKTLERRVKSNKNIKGPMGPSCTFGTENEKRLCQHIKDMQSKGFPLTIDDLRKIAFSFAEQLHIKHKFNMASEKAGYDWVQLFLKRNPGISLRKSEGLSYARRQGMNKDEVRVYFEMLERVLSENDLFDKPGHVFNMDETELQLNNRPAHVLAKRGSKAVAMSTSTEKGETITVIACCNAEGTFLPPAIIMKGQRKKPEFEDGLPPGSRLFMSQKSAYITSDIFLEWMKEQFLPRKPAGKVLLLLDGHSTHCNSVKMLEFANENNIILLSMPSHTSHYLQPLDVAVFKALKTYFYEACRLWTRRNPGRRLTRNQFGALLNEGWGKAATPANAISAFKATGVYPLNPGAIPDSAFDGSIEPSFERHQVDHKETGSHKPATVSVVSDLVPSTSGIQMASIVLDPVPSTSGTQMTSVLSDPFPSTSGTQPSSNKSTPTRVLNEVSPLPKKLNEVRKRAKQEKTAKEDKCKKPRIIKQKQKTGRTKEKKTARKRKSIRRISDSSCDEIPIDFRESSESEIDENEMDNCRGCGENYYKTQLVEDWLQCNICKLWVHENCTEFEDMCSNCGNKNKLKLKDRKSKGKSKETTGHLPPSPVAITPGHSGCIMVQKKCILCGRTREDDVKLHRFPRDEARCRLWLQKLNMEETCPKFAYDNYVLCQLHFDDSMYNPLASRILRPLASPIPVEPVVDPVPARPVSPEPIPSTSTCSDPKPGTSRSSDITPTVPPEDLFSGMSPITQQFLLSQMKNAKRDVHGRRWSTSDKAAALALFKKSPKAYAFLRKFLPFPSPTTLRTHLARIPFSPGINPILFEQLSKSISHLKKEDRICCLLFDEMAIRPHLNYDDANDTIYGFQDFGSGRRINEVANSALVFMAQGLRKQWKQPVAYYFSRGGVKGVDLGSIIREVLSALNSVNLNCVATVCDLGSTFGLWSMPNVYQRKSVSVRGNWTEEALQTAMHAVQKDGMSVYAAANLYSIPRKTLERRLKKQNDKKGPMGPSGVFGPENEKKLSCHIKQMQKSGFPLTIDDVRKIAYQFAEELKIQHKFNRTSEKAGYVWLQSFLRRNPEITLRKSEGVSFARSQALNRSEVKGYFELLEKTLNENNLMNKPNSIFNMDETDMQLNNRPGHVLAEKGSKAVSMATSTEKGETITVIGCCNAEGNFLPLTCIIKGKNKKPEYEDGMPPGSIVFMSEKSAYITSEIFLEWLKVQFVPRKPPGKVLLILDGHSTHCNSVAMLNYAKENDIILLSLPSHTSHYLQPLDRTVFKPLKTYYYEFCRLWIKQNLGRRITRLQFGMLLNQAWGKAASVENAISGFRATGVYPFNPECVPDYAFTNESCETANNPRDKTESPNNPQNAQNAPEISDEVVEPKPSTSQDTEMEKFTPSKILKQISPIPQKLTETRKRAKQLGILLTSKEHIENRIAKEDKKLVAEKKASMKNIEKSAIKQEETKKKDIKKTYSNKVIVRKRKAIVRISDSETSSNEGESISEIHKKEENICRGCGENYYKTKLIEDWLQCVLCDLWVHENCTEFDNMCSICGNNKKKELREAGKKGKGKKTIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00239194;
- 90% Identity
- iTF_00239194;
- 80% Identity
- iTF_00239194;