Bneb020878.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- bab1_1
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000006.1:42699272-42722821[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-10 2.2e-08 35.0 0.0 2 39 573 611 572 615 0.90 2 4 6.3e-12 1.2e-09 39.1 0.1 1 39 626 664 626 667 0.95 3 4 2.1e-17 4.1e-15 56.6 0.0 1 45 681 726 681 726 0.97 4 4 4.8e-18 9.6e-16 58.6 0.0 1 42 733 775 733 777 0.97
Sequence Information
- Coding Sequence
- ATGAGCGCGAAAAACGGCTCATTGTTGAGatcAAAGCCGAAAGAAGTAATTACTGGCAATTATTTTGAAGACGACTGTAATTTATCTGGTGACCTTGACTTGGAACAGGGCAATATGGCCATACACGCACAtgaacaacatatttttaatgatCAAGTTGAAAATCACAACAATCAGCATTATTGTTTGCGATGGAATAACTATCAAACAAATATGACATCTGTATTTCATCAATTGTTACAAAATGAGGAATTTGTAGATGTTACATTAGCGTGTAATGATCTATCATTAAAAGCTCACAAGgTCGTTTTATCGGCTTGTTCAACGTATTTCCAAAAGTTACTGATTGAAAATCCATGTAAACATCCAACAATTATAATGCCTCAAGATGTATGTTTctcagatttaaaatttattattgaatttgtaTATAGAGGAGAAATTGATGTTTCTCAAGAAGAGTTACAGtcATTATTAAGAACTGCTGATCAGCTAAAAATTAAGGGTTTATGTGAACTTCCTGTTGGAAATCAATTAATTTCTACAACATCAgctataaataacaataatattaaaaatgagctGGACTCAAACAATCAAATTGAACTTTCACCTGTGCCAATAGTATCACGTCGAGTGTATTCAAAATTACGACGTATACACACATCTGGGACTAAACGATTTCATCGTAATCGAATATTATCTCCTAAACGCCTGTACAAGGACATTGCACATATAACAGGAGATTCACCAGAAAATAATAATTCGGAAAAGGAACACATTCAAGATACTGCCGAAATCAAAGAGGAACCCACTGGAAATTCCATTGTAAATGAAGACGACAAAGAAAAGACAATGCCCGCGGTGGTTATGGTAAGCGAGGGGAAAGCCAGTGGAGAAGAAGGTTGTGAAGGTGGTTCAGATACGCGTGATAGTAGTGgcaataataatagtaatagaCATCAAGATTCATCTAGAATCTCTGATCCAggaatacataatttaaaacgtGAAACACTGGATCATATTTCAGACAATAACGGCGATCATTCTTGTACTGATCGCGATAATTTATGGTCACCGGCAGCGAGCAGCGACAGTGGTAGCAGTAATCAACCACTTAATATGACCGGTCATGGATTATTGTCCTCGcagGTCTTATTTCCGGGCCATGTTGAACTTCCTCCAGAACCTCCCGCGCCGTCAGCGACACCAGTGCCATGCCCTCCACAAGAGCTTATCCATAATTCACACACTGTTCAATTAACTCATTGTTCTCCAGCCACTCATCATGATCTCAGTgATACAAGTATGTCTGGCCAGGGTGATGGTATGCATTGTAGTGGAAGTATGTCAAGTTATGGGGAAGATGTGAAAGTGAAATTTGAAACGTTGCGATCGGTTGATTCAGCTGGTGATATTGATGCTTGTAGTCGTATGTCCCAGGATAGCACGGACTCGATGCATCAACAGTCATCGATGATGATAACGCCACAACTTTTAGGATTACTTCCAAGATCGTCagATGTAAGCATGAATGATTCATCTTCACGAATTAAGACTACTAATGGGCACAATTCTCATACATATAACACACTTCCTTTACAAAATCATTCTCAGTCGCATGGAAATTTAAGTAATGGTTTGAATACAAGTTCAGGTTCTACTTCGGGTACAGGGTCTGGGCATACTGGTGGTGGGCCTAAAACTTGGAGTCAAGAAGATATGGAACTTGCTTTAGATGCATTAAGAAATCATAATATGAGTTTAACTAAGGCCTCTGCGACATATGGAATACCTTCGACTACCTTATGGCAACGTGCTCACCGATTAGGCATTGATACTCCAAAGAAAGAAGGTCCAACAAAATCGTGGACAGAAGATAATTTAAATTCAGCACTGGAAGCTTTAAGAACGGGTACAATTTCTGCGAACAAAGCCAGTAAAGCATATGGAATTCCAAGTAGTACATTGTATAAAATTGCAAGACGTGAAGGCATTCGTTTGGCTGCTCCATTCAATGCTGCGCCAACTACCTGGTCCCCAGATGATCTAGAGCGTGCACTAGAATCAATTCGTTCGGGTCAAACATCAGTTCAGCGAGCTTCCACAGAATTCGGGATACCAACCGGAACATTGTACGGACGTTGTAAGCGTGAAGGTATCGAATTATCTCGATCAAATCCAACGCCGTGGTCTGAAGATGCTATGGGTGAAGCTTTGGAAGCCGTTagAGTTGGCCAAATGTCAATAAATCAGGCAGCAATTCACTATAACTTACCATATTCATCACTGTACGGGCGATTCAAGCGTGGTAAATATGAAAATGATTCAACCGGGAACAATTCAATGCAACCAGACAATAGCCACGTGACAGAGAATACAAACTCCGTGCACGCGTCCGATCATCAACAACTTATGCAACAGTACGCGACAGTGTCACAACAAATGAACGCAAATCAACATCAACAAAGTATGGTGATCGGCGGGACCACAGACGCAAATCAACATCAACATCAACCGCAGCAATATACACAACCGCATAGTACAATAAGCTGA
- Protein Sequence
- MSAKNGSLLRSKPKEVITGNYFEDDCNLSGDLDLEQGNMAIHAHEQHIFNDQVENHNNQHYCLRWNNYQTNMTSVFHQLLQNEEFVDVTLACNDLSLKAHKVVLSACSTYFQKLLIENPCKHPTIIMPQDVCFSDLKFIIEFVYRGEIDVSQEELQSLLRTADQLKIKGLCELPVGNQLISTTSAINNNNIKNELDSNNQIELSPVPIVSRRVYSKLRRIHTSGTKRFHRNRILSPKRLYKDIAHITGDSPENNNSEKEHIQDTAEIKEEPTGNSIVNEDDKEKTMPAVVMVSEGKASGEEGCEGGSDTRDSSGNNNSNRHQDSSRISDPGIHNLKRETLDHISDNNGDHSCTDRDNLWSPAASSDSGSSNQPLNMTGHGLLSSQVLFPGHVELPPEPPAPSATPVPCPPQELIHNSHTVQLTHCSPATHHDLSDTSMSGQGDGMHCSGSMSSYGEDVKVKFETLRSVDSAGDIDACSRMSQDSTDSMHQQSSMMITPQLLGLLPRSSDVSMNDSSSRIKTTNGHNSHTYNTLPLQNHSQSHGNLSNGLNTSSGSTSGTGSGHTGGGPKTWSQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEDNLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPDDLERALESIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYENDSTGNNSMQPDNSHVTENTNSVHASDHQQLMQQYATVSQQMNANQHQQSMVIGGTTDANQHQHQPQQYTQPHSTIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00239312;
- 90% Identity
- iTF_00239312;
- 80% Identity
- iTF_00239312;