Basic Information

Insect: Brachylomia viminalis
Gene Symbol: stc
Assembly: GCA_937001565.2
Location: CAKZJP020000569.1:438572-450324[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3 5.6e+04 -4.1 1.6 15 19 630 634 629 634 0.81

2 12 0.051 9.5e+02 1.5 1.2 2 10 662 670 662 670 0.93

3 12 4.8e-05 0.89 11.2 18.1 4 19 678 693 676 693 0.93

4 12 5.6e-07 0.01 17.4 12.3 1 18 729 746 729 747 0.97

5 12 0.0013 25 6.6 16.0 1 19 788 806 788 806 0.98

6 12 2.3e-05 0.43 12.2 12.7 1 19 847 869 847 869 0.87

7 12 3 5.6e+04 -5.1 2.2 6 10 899 903 899 903 0.94

8 12 0.02 3.6e+02 2.9 7.3 1 11 909 919 909 920 0.93

9 12 0.055 1e+03 1.4 0.3 4 10 924 930 923 931 0.93

10 12 1.9e-05 0.35 12.5 13.9 3 19 938 954 936 954 0.92

11 12 0.0005 9.4 8.0 9.6 10 18 1001 1009 998 1010 0.92

12 12 1.4e-08 0.00025 22.6 8.5 1 16 1046 1061 1046 1062 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3	5.6e+04	-4.1	1.6	15	19	630	634	629	634	0.81
2	12	0.051	9.5e+02	1.5	1.2	2	10	662	670	662	670	0.93
3	12	4.8e-05	0.89	11.2	18.1	4	19	678	693	676	693	0.93
4	12	5.6e-07	0.01	17.4	12.3	1	18	729	746	729	747	0.97
5	12	0.0013	25	6.6	16.0	1	19	788	806	788	806	0.98
6	12	2.3e-05	0.43	12.2	12.7	1	19	847	869	847	869	0.87
7	12	3	5.6e+04	-5.1	2.2	6	10	899	903	899	903	0.94
8	12	0.02	3.6e+02	2.9	7.3	1	11	909	919	909	920	0.93
9	12	0.055	1e+03	1.4	0.3	4	10	924	930	923	931	0.93
10	12	1.9e-05	0.35	12.5	13.9	3	19	938	954	936	954	0.92
11	12	0.0005	9.4	8.0	9.6	10	18	1001	1009	998	1010	0.92
12	12	1.4e-08	0.00025	22.6	8.5	1	16	1046	1061	1046	1062	0.96

Sequence Information

Coding Sequence: ATGTCTCAGTGGAACAACACATACGCTTACAACAACCAGTACCAAGCTTGGAACGGCGACCCAAATGTACAATATGTCAACCAAGCCTACTACCCCAATAGACCTGAGCAAGCCAACCAGTATGTAAGCTTTAATGAGTTTCTTTCTCAAATGCAAAACAGCGGTGGGCCCAGTGCTAGCAACTATAATAATGTACAATATGAAAACTATCCTGCAAGGCAATATAATTACCAGATTGCACCATCCACTGCTCAAAACCCCCAGTTAGACAGTTATGGATATCCAGCAACCACAGCCAATGTGTCCAGTGGCACTGAAGCATACCCAATGAATGTTCAAAGTCAATACGACCCAGTGGCATCCAATCCTAATGCTTATACAAATGCAATGATACTCAAATCAAATCTCACTCCTACAGCTACAGAATTTGTGCCAAAAGGTTCCATGATGACACCTTCAACTAGCACTCAGAACATTCCTGAATCTAGTAATGCGCATGATGATAGTGAATCTagtaataattatagtaatGATAATGAACCTAAGAACCAATACGGTAATATGAATGATTCACGAAATAACCACCCTAGTATAAATGAACCACGAAATGCTAGTGCTAGTTCATCAAATACAAACTGGAGAGAAAGATCAAAACAAAAGCAGAGTGAGCGAGAGAGCTCACAACAAAATACAGAAGCAAGCCAGAAAACTGAATCACACCAACGTCCTCAAGATCACCCCAAGAACCAAGAATCAAATGGTCGCCATCGTGATAATAATCATCGCAGTAACGAATCTAATGGTAGACATCATGATTCAAACAACCGCAATCAGGAATCAAGTAACCGTAATCAAGAATCAAACAATCGTAGTCAAGAACCAGATAGCAGACAGTATGAATCTAATAGTCGCCAACAGGATTCTAGCAGCCGTAACTATGAATCTAATAACCGCAACTATGATTCTAGTAACAAAAGAGGCCAAGGAAAAGGAAATTACAAGTCAAAGAATAAAGATGATGCTCGTACCTTCTACAATAGTGCAATAAGTAAGGACAGTCAGGATGTGAGGAATGGGAGAGGAGAAGCTTCAGGGCGTGGAAAGAATTGGGTTGGAACTCCCCGGCTTCGAGCAATGGATCGCAATAGCACAGAGGATGAACAATATGCCAATACTTATTTACAAGGTAGAGAAGAGAGGTATGAGAGAGATAACAGAGACCGGAATAGTCAAAACCGAGATGATTTCCCTACAGAAAGAGATACCCGTGACAAGCATAGAGATAGCCGAGATATCCCTGAAAGAGATAGAGATTACCGAGATGTCCGTGAGACAGAAAGAGATAACCGAGATATTCGCGAGAGAGACAGAGGTAATCGAGACATTCGCGAGAGAGACAGAGGTAACCGAGATATGCGCGAAAAGGATAGAGACAGTCGAGATTTCCGCGAAAGGGGTAGAGATTATAGAGATTTCCGTGAGAGAGATAGAGACAACAGAGATATCCGTGAGACCGATAGAGACTACCGTGATTTCCGTGACATGGATAGAGAAAACCGTGATATTCGCGAAAGGGATAGAGGTAACCGAGATATTCGCGAAAGAGACAGAGATACTAGAGAAAGGGAGAAAGCAACTAAGTCTGAAAATGTTCCCAGTCCTGCTCGAATTAAAACGAAATATGGTAATGATCAAGTAAACAAAGAGATGACCCAACGTGAGCGTCTGACTGAACAACTAGACAAGGGCACACTGGAGTGCCTGGTCTGCTGCGACAGAGTCAAACAATTTGACCAGGTGTGGTCGTGCTGCAACTGTTACCATGTCCTACATCTGAGGTGCATCCGGAAGTGGGCCATGAGCAGTATGGTTGAGGGCAAGTGGCGCTGCCCAGCTTGCCAGAACACGAACGAAGCCATCCCTACTGAATACCGCTGTATGTGTGGAGCGGTGCGCGCGCCTGAGTACCAGCGCGGTTCCACGGGCGCACACACCTGCGGCCGCGCGTGCCGCCGCCCGCGAGCGTGTCCGCATCCCTGTACGTTGCTGTGCCATCCCGGACCGTGCCCGCCGTGCCAGGCTACTGTCGTTAAACATTGTGGTTGCGGCGCTGAAACCCGCTCAGTACTCTGCAGCAGCAAGTTGCCGCAAGTGTGCGGTCGCGTATGTGGCCGTACCCTACTGTGTGGTGTCCATAACTGTGCCAAGGGCTGCCATGAGGGTCCCTGTGACATATGTGATGAAACTGTCGAACAAGTATGCTACTGCCCCGCCGCCAAGTCTCGCTCAGTGACATGCACAGCCGAGACGGGCACGTGCACCAGCTGGTCGTGCGGCGACACGTGCGGCCGCGTGCTGGCGTGCGGCGCGCACGTGTGTCGCGCGCACTGCCACGCGCCGCCCTGCCAGCCCTGCCAGCTACTGCCGCAGTATGTGCACAGCTGTCCCTGCGGGAATACGCAGTTGGCCAAAGATTCGCGCAAGGCCTGCACGGACCCAATCCCGCTGTGCGGCAACATCTGTGCCAAACCGCTGCAGTGCGGTCCCGCCGGAGATAAACATTTCTGCAAACTTAATTGTCATGAAGgaCCGTGTCCGGAATGTCCCGATAAAACGGTTCTCCAATGCCGTTGCGGCCACTCAAGTCGCGAGGTCCCTTGCGCCGACCTGTCCGAGATGTACAACAACGTGCTGTGCCAAAAGAAGTGCAATAAGAAACTGTCGTGCGGGCGTCACCGCTGCCGCACGGCGTGCTGCGCGGCCACGTCGCACCGCTGCGCCGTGGTGTGCGGCCGCACGCTGTCGTGCCAGGCGCACCGCTGCGACGAGTTCTGTCACACCGGGCACTGCGCGCCCTGCCCGCGCGTCAGTTTCGACGAGCTAACCTGTGAATGCGGCGCGGAAGTGATCTTGCCTCCAGTCCGCTGCGGGGCTCGGCCCCCGCCCTGCAGCGCACCCTGCATCCGCGAACGGCCCTGCAAGCACCCGCCACACCACTCCTGCCACTCCGGAGACTGTCCGCCTTGTGTGGTGCTCACTACCAAGCGTTGCCATGGCGACCACGAGGAGCGAAAAACAATACCGTGTTCTCAAGAGGAGTTCTCGTGTGGTCTTCCATGCGGGAAGCCGCTGCCTTGCGGCAAGCATACCTGTATCAAGACTTGTCACAAGGGAGCCTGTGACTCTGGCAAGTAA
Protein Sequence: MSQWNNTYAYNNQYQAWNGDPNVQYVNQAYYPNRPEQANQYVSFNEFLSQMQNSGGPSASNYNNVQYENYPARQYNYQIAPSTAQNPQLDSYGYPATTANVSSGTEAYPMNVQSQYDPVASNPNAYTNAMILKSNLTPTATEFVPKGSMMTPSTSTQNIPESSNAHDDSESSNNYSNDNEPKNQYGNMNDSRNNHPSINEPRNASASSSNTNWRERSKQKQSERESSQQNTEASQKTESHQRPQDHPKNQESNGRHRDNNHRSNESNGRHHDSNNRNQESSNRNQESNNRSQEPDSRQYESNSRQQDSSSRNYESNNRNYDSSNKRGQGKGNYKSKNKDDARTFYNSAISKDSQDVRNGRGEASGRGKNWVGTPRLRAMDRNSTEDEQYANTYLQGREERYERDNRDRNSQNRDDFPTERDTRDKHRDSRDIPERDRDYRDVRETERDNRDIRERDRGNRDIRERDRGNRDMREKDRDSRDFRERGRDYRDFRERDRDNRDIRETDRDYRDFRDMDRENRDIRERDRGNRDIRERDRDTREREKATKSENVPSPARIKTKYGNDQVNKEMTQRERLTEQLDKGTLECLVCCDRVKQFDQVWSCCNCYHVLHLRCIRKWAMSSMVEGKWRCPACQNTNEAIPTEYRCMCGAVRAPEYQRGSTGAHTCGRACRRPRACPHPCTLLCHPGPCPPCQATVVKHCGCGAETRSVLCSSKLPQVCGRVCGRTLLCGVHNCAKGCHEGPCDICDETVEQVCYCPAAKSRSVTCTAETGTCTSWSCGDTCGRVLACGAHVCRAHCHAPPCQPCQLLPQYVHSCPCGNTQLAKDSRKACTDPIPLCGNICAKPLQCGPAGDKHFCKLNCHEGPCPECPDKTVLQCRCGHSSREVPCADLSEMYNNVLCQKKCNKKLSCGRHRCRTACCAATSHRCAVVCGRTLSCQAHRCDEFCHTGHCAPCPRVSFDELTCECGAEVILPPVRCGARPPPCSAPCIRERPCKHPPHHSCHSGDCPPCVVLTTKRCHGDHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKTCHKGACDSGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00953207;
90% Identity: iTF_00758839;
80% Identity: -