Bvim038176.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000490.1:22886-40107[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5 7e+02 2.6 2.7 1 23 208 231 208 231 0.93 2 13 0.02 2.9 10.1 0.2 2 23 324 346 323 346 0.90 3 13 0.028 3.9 9.7 1.7 2 21 384 403 383 404 0.94 4 13 0.97 1.4e+02 4.8 1.8 1 20 711 729 711 730 0.83 5 13 1 1.5e+02 4.7 4.2 1 23 744 766 744 766 0.96 6 13 0.14 19 7.5 0.6 2 23 772 793 771 793 0.95 7 13 0.58 83 5.5 0.9 1 13 816 827 816 837 0.71 8 13 0.00049 0.069 15.2 0.2 2 23 917 938 916 938 0.97 9 13 6e-07 8.6e-05 24.3 2.7 1 23 944 966 944 966 0.99 10 13 1.2e-05 0.0017 20.2 0.7 2 23 972 993 971 993 0.97 11 13 0.0017 0.24 13.5 2.0 2 23 1000 1022 999 1022 0.95 12 13 1.2 1.7e+02 4.6 0.1 1 19 1029 1047 1029 1048 0.83 13 13 0.0034 0.48 12.6 1.3 3 23 1061 1082 1060 1082 0.95
Sequence Information
- Coding Sequence
- ATGGCGGACACATCAAGAAAAAGGTCGAGAAAGTCGAAATTAGTGCCTCGAGAGTGTGCTTTAGACGAAGATGATCTTGAATTGCAGGTTTCAGAGCGGAAAGTACCCAAAGGTACGAAACAGACCACTATCAGACAACCAACAAAAAAGGTAGCTAAACCGTTAGAGCCAACCTTCTCAAAACAAGAAGAAGTATACGACACGAGTGTCCTAAAAAAAATCAACGCAGCAGCTAAAGAAGATTTGGAGCCACAACCTAACTTAGTACCAAGAAAATTCGAGATAAACATCGAAGTAGAATCTTGTGATGACGACGACGAATTtgcaggaatgactgacgaaaATCGCTTAACACCGATTATCAAAGACGTCATCACGACAAAAGTACGAACCGAACCTATAGAACTCTCTCGTGAAATCATACTCAACGCTACTGATTACATACTCCAGAATTCAACAGACATTGCTGATAAAATCCTCAATATATGCGTTAGGAATACTGTAGGTTATGAAGATAAAAGGAATTTGATACAAAACTGGCAGGAGATGCGAATACAACAGACTTTAGATGAATGGCGTACTTGGCAGTTCCGTAGTTTTCACAGAGAAGAACCTCTATTCTATAAATGCTACATCTGTACGAGATCCTGGTGGCATTTAACAGATTTCCGCAATCATATGTCTTCGCAACATACTGATGATGTAATGGTTATCATTGCTTTGGAAACATATAAAACGCATGAAGCCAATTTGATAGCGTACCACCATAGGCGTGTAGTTGTAAAAGATATATATACAGAAGGCCCTTGTTACCGGTGCGGTGAAGATTATGGTGATCATAAGTTAGAATCGAGATTCCAACAGAAGTACTATAAAAAGGAAGGTTGCACAAAACAGTTTTTCAGCTGTATGGGTCTAAGGGACCATTTTGCTAGCTGTCCTGTCTGTAAACTCCAAGATAAACCGTTGAAATGTGATATATGTAAGTCAAGATTTAATACAGAAGATGAATTAAACGGTCATTTAGTATTGTCTCATTCAGTTCGCTCTGATATACCGATAATGTGTCACTATAAGAACTGCAAGCGCTGTTCGGAGAGGTTTTCTTGTCAATATTTGCATAAATGCAGACAAAAGGGACCTCATAGTGAGTGTACCCACTGTTTACAGAGTTTCTCAAATGTCAAGTGTTTGGAAATCCATATGGAACGGTCAAGTAAGCCGTACAAATGTGAAGTTTGCCACACGGTGATGGCCTATAGCTGTAAAAAGTATGAACATATGCTGGTACATACTGACAAGTATATGATGGTAAGGAAATGCGTGACGTGTAAGGGTTTGAACGTGTTTTTAAATACTGAAGATGCTGTGGCACATCGGTCGTTGAAACATGAGTTCAGGGAAACGAAACAACAAAGCTATTTTCCTAAATTATTAGTCCCATCATCCTGCGTATATCAAAGTTTAGCAGAATCTGAATCGAAAGAACGAGAAGAAGAATTGGTAATGGCAGAACCAGAATCAGTAAAAGAAGAACAAGAATCAGAAccagaagaagaagaatccgtaccagaagaagaagaatccgTACCAGAAGAAGAAGAATTCGTAGCGGAAGAAGAAGAATACGTACCGGAAGAAGAATCAGTATCAAAAAGTGATAGAGAATCTGTTTCAGTATGTGAACAGAAATTGTTACAAGCAGAGCTAGAATCGGCAACACAATTTTTATTGGGAGCTGTTGTTGTAAAacaAGAGCCAGAAGACTCGGAAGGTAGCCCAAGACTTGTAATCAAAGAAGAACCATTCGAAGCATTTGAAAAACAAATGCATGAAGAAGATAATCGAACCAAGAATTTTGAACACCAAGTAAGTGTCAAGGATGAATATGTGGAGGAAGAGTATGATGAATACGAAGGGGATCTTATCAAACTGAACTTCAATATAGAAGACTTATTAGTGAAAGAAGAATCAATTCAAGAAGATGATGATTATACTCTAGAACAGACAGAAGATAAAGAAGAATCGGAAAATGATGACCCAGATGAAATTTTACAACGATTGAAAGAAGAGTCCATGCTGGAACCTGAAGTTATTATAGAAGGGGAtgttaagaaaaacaaaagaatgtacCGATGTACTAAATGCGGACTCACAGCGACACATAAACATTATAGTAGTCACATGGAATTCACATTGTGTGGCACAAACTCTGCCAAACATAAAACCTACACCTGtaccaaatgtcaaaataaatttgtgtccatgaaaaaatatttgacacaTTTCAAAGAGCATGGATACCAGCGCCTGTCATGCCCAGAGTGCTTGAAACAATTTGACACATTCACGCGTTTAGGGCAACATCTACAACAACATGTGAAGCAAAATTTTGTCCGTGTAAAACTGATCACACACACAGGAAAGGCGATGAAAAGACCTGATTATCAATGCAAAAAATGTGGAAAGATTATAGTTTCTCATGGGTTTTTTGAGCATTGGGAGCTACATATAAATGCTCAGCCTACGCATCCTATCAAGGTGACTTCTAGGCCGAAGCAACAGGATGGAGAAGATGCATGCATGCATGAAACAATTATAAAGGAGTGCATTGccCTCTTAAACAAAAGGCCAAAACAATGCAATCACTGCCACCGTTGGTTCAAACGAGTCTATGAATGCAAGCGCCATATCATAGAACATCTACTTACGGACGCTTACAACCAGAAACACATCTACGACAAACTCAAATGCCAAGTTTGTGGACAAGGGTTTGCATTACCAGAAAAATATAAGCAACATATGCGAGACCATGCCTCGCTACCCGTATACAAGTGTGAACTATGTGATCGTACCTTTAGTGATTCAAGTAATTTtactaaacataaaaaagtGCATAATTTGACAGTGACTGTCTGTGATTTGTGTGGTAAAAAGTTTCAGTCGAAAGTGTCTTTGGAGAAGCATATGGAGAAACACATGGACACAGAGCCAATTAGCTGCAAGATTTGCAAAAAAGTCTTCTACTTCGATTCTTCCTACCGGCGCCACGTCAAATACTTTCATGAAAAAACCATCATGGGTTACCGCTGCGTTATTTGCAGTGAACGATTCGACAGTTTAAAACTTAAATGGGACCATTTGTGGGAGGTACATAAGGAAAGGAAACAGAAAGCAGACTGTCCTATATGCCATCAGTCCTTCAGGAAGTTTTCCGATGTCCGCCTCCATGCGAGGCTAATGCATCAGACAGAAGTTTCAgtgttaaatgtaaaaaaaaaagcaacaaaTCCCAATATAGATATTGATATGTTTTTAAGGGACCCTGCGAAGATAAAAGCTGGAAGGATGGAGACTTTGGTTGTGTATGATTCAGATTGA
- Protein Sequence
- MADTSRKRSRKSKLVPRECALDEDDLELQVSERKVPKGTKQTTIRQPTKKVAKPLEPTFSKQEEVYDTSVLKKINAAAKEDLEPQPNLVPRKFEINIEVESCDDDDEFAGMTDENRLTPIIKDVITTKVRTEPIELSREIILNATDYILQNSTDIADKILNICVRNTVGYEDKRNLIQNWQEMRIQQTLDEWRTWQFRSFHREEPLFYKCYICTRSWWHLTDFRNHMSSQHTDDVMVIIALETYKTHEANLIAYHHRRVVVKDIYTEGPCYRCGEDYGDHKLESRFQQKYYKKEGCTKQFFSCMGLRDHFASCPVCKLQDKPLKCDICKSRFNTEDELNGHLVLSHSVRSDIPIMCHYKNCKRCSERFSCQYLHKCRQKGPHSECTHCLQSFSNVKCLEIHMERSSKPYKCEVCHTVMAYSCKKYEHMLVHTDKYMMVRKCVTCKGLNVFLNTEDAVAHRSLKHEFRETKQQSYFPKLLVPSSCVYQSLAESESKEREEELVMAEPESVKEEQESEPEEEESVPEEEESVPEEEEFVAEEEEYVPEEESVSKSDRESVSVCEQKLLQAELESATQFLLGAVVVKQEPEDSEGSPRLVIKEEPFEAFEKQMHEEDNRTKNFEHQVSVKDEYVEEEYDEYEGDLIKLNFNIEDLLVKEESIQEDDDYTLEQTEDKEESENDDPDEILQRLKEESMLEPEVIIEGDVKKNKRMYRCTKCGLTATHKHYSSHMEFTLCGTNSAKHKTYTCTKCQNKFVSMKKYLTHFKEHGYQRLSCPECLKQFDTFTRLGQHLQQHVKQNFVRVKLITHTGKAMKRPDYQCKKCGKIIVSHGFFEHWELHINAQPTHPIKVTSRPKQQDGEDACMHETIIKECIALLNKRPKQCNHCHRWFKRVYECKRHIIEHLLTDAYNQKHIYDKLKCQVCGQGFALPEKYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLTVTVCDLCGKKFQSKVSLEKHMEKHMDTEPISCKICKKVFYFDSSYRRHVKYFHEKTIMGYRCVICSERFDSLKLKWDHLWEVHKERKQKADCPICHQSFRKFSDVRLHARLMHQTEVSVLNVKKKATNPNIDIDMFLRDPAKIKAGRMETLVVYDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -