Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.3e-05 0.0018 20.1 0.8 1 23 39 62 39 62 0.96

2 5 0.0001 0.015 17.3 1.9 3 23 99 120 98 120 0.96

3 5 7.7e-05 0.011 17.7 1.5 2 23 127 149 127 149 0.97

4 5 0.00034 0.049 15.7 0.2 1 23 155 177 155 177 0.98

5 5 2.7e-06 0.00039 22.3 0.7 1 23 183 206 183 206 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.3e-05	0.0018	20.1	0.8	1	23	39	62	39	62	0.96
2	5	0.0001	0.015	17.3	1.9	3	23	99	120	98	120	0.96
3	5	7.7e-05	0.011	17.7	1.5	2	23	127	149	127	149	0.97
4	5	0.00034	0.049	15.7	0.2	1	23	155	177	155	177	0.98
5	5	2.7e-06	0.00039	22.3	0.7	1	23	183	206	183	206	0.95

Coding Sequence: ATGAGGAAGCAAAAACAAGCGCAGATCTATGCACGTTCTGGCAGCCATATTGTGTGTGCACAGAACATAAATGCCCTGTGTCCACCCAAATACTACGCAATAGTTCAAAACGAATACCAATGCAATATCTGCGGCAAACGTTACTCCTCGCAACCTCTCGTGTCCCAACACTATCGCTTCGTTCACCTCAAACGGCGCCCGAAAGACCGAAAATGCACGAAGTGTGACGAGCGAGTCCCCGACTACCTCCGAACCGCACATTTAGAAAAGGAACACGGTGTACCCGCGCCATCTTGCGGAGTATGCGGCAAAAAGTTCAGATTCCCATGCAACGTGATACAACATCAGAAAAAAGTGCATATGGGCGAGAAATCAGAAAAATGTCAAGTGTGTGAAAAGAGCTTTTTTAATAAGCTCAGTTTGAAGTTACATATTATGTCTACGCATTCTGCTGAAAAGAGGTTTAAATGTGGGGTGTGTGAGAGGGAGTTCCGTTGGGAAAATAATTTAAGGGATCATGTTAGAATACACACGGGTGACAAACGATTTATTTGTACTGTATGTGAGAAGGCTTTTGTTCAGAAATCTACCTTGAAGCAGCATACAGCAAGGAATCATCCGGGGGTGGACATCTCGTGA
Protein Sequence: MRKQKQAQIYARSGSHIVCAQNINALCPPKYYAIVQNEYQCNICGKRYSSQPLVSQHYRFVHLKRRPKDRKCTKCDERVPDYLRTAHLEKEHGVPAPSCGVCGKKFRFPCNVIQHQKKVHMGEKSEKCQVCEKSFFNKLSLKLHIMSTHSAEKRFKCGVCEREFRWENNLRDHVRIHTGDKRFICTVCEKAFVQKSTLKQHTARNHPGVDIS

Sequence clustering based on sequence similarity using MMseqs2