Bvim031173.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000362.1:265199-309710[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00075 0.11 14.6 2.8 1 23 528 550 528 550 0.99 2 13 0.1 14 7.9 1.1 1 23 568 591 568 591 0.91 3 13 0.036 5 9.3 0.3 2 23 598 619 597 619 0.89 4 13 0.00017 0.024 16.6 0.1 2 23 627 649 627 649 0.93 5 13 0.00024 0.034 16.2 7.8 1 23 662 684 662 684 0.95 6 13 0.00024 0.034 16.2 7.8 1 23 711 733 711 733 0.95 7 13 0.00024 0.034 16.2 7.8 1 23 760 782 760 782 0.95 8 13 0.00024 0.034 16.2 7.8 1 23 809 831 809 831 0.95 9 13 0.00024 0.034 16.2 7.8 1 23 858 880 858 880 0.95 10 13 0.00024 0.034 16.2 7.8 1 23 907 929 907 929 0.95 11 13 0.00024 0.034 16.2 7.8 1 23 956 978 956 978 0.95 12 13 0.00068 0.096 14.7 7.4 1 23 1005 1027 1005 1027 0.95 13 13 0.48 69 5.8 0.1 9 23 1049 1063 1047 1063 0.94
Sequence Information
- Coding Sequence
- ATGGCGCTATGTGAAAGTCAGCTGGACTCTGCGTTGCCGCAGCTCAAGCGGGAGGAGTCCTCGAGTAGCGACGGTAGTCAGAAGCAGACGCCCGAAAAGAAGACCAAGGTCGAGCATAATGGAGAGATTTATGGGCTGAACCAAGTGCCTGGCGGTCTGCCGCTAACGGTGGACTACCGCTCGCCCGTATCACACTTCGTGCCGCCCGAGTTGTACGCGGTGAGGCAGAAGCAGGAGCCGATCAGCACTGCTGAAACAAGTGAACCGCCGACTCCTGTGAAGCGGAAGCGAGGCAGGCCCAGGGTGGACAAGACAAGTCCTGAGTATCTGGCGAACTTGGCGGCCAGGAAACAAGCCAAGGAGATGGccgcTATGATGAATAACAGGACCCCAGAAAGTGGGGAAAAGCGTAAGCGGGGAAGGCCACGCGTGGACAAAACAAGCCCAGAATATTTGGCTAGAAAAAGGGCACGCGAGTTAGAAGCACTGGAGAGAAAAGCTAAAAGAGAGTATAAACGTCGCGCCACTGGAGCAAAACCCATCTCAAAAACTGCATTACAAATGTCTTCGCGCGTCAAAAAACGACAGTTGCcagcaaacaataaaaaaatgggtGTTGCCATGAGGAAATTACCGCAGAAAATTGCCAACACCGTCAGAATGGCTGGCAACAACGTGAGAAAGGTTGGCGATAGGAAGGTTTTAGTGAGGCGGACTGAAAGCCGAAAGTTTATTAAGCGAAAAGATTCTGCAGCCTCATCGTCTGCCGGCGAGACAACTCCGAGGACCAAGAGAAAATATACTAAAAGGACTCCGAGTGCTAAGAAAGATGCTccACCTTCGACGGAGCGCGTCAAGGGCAAGCGAGGTAGACCGCGGAAGGTGGACCAACTCGCAGCTAGCAACAAGCAGCAACAACAACCTAAGATTCGTGTTAGAAATAACCTGATGCCCGTCAACTCTGAACCGATCACAGTGGATAGTGATGATGAGCCGGATCTGGGTTCACCAAGTCAAGCATCAGACTCGCTGAGCTTGGATGAGAATCTGCGAGCGTTGAGACATATCCATGAGAAATACGCTAATATTGATAAGGACGATCTCTACGACACTCATTTGCTGGCCGCCAACTTCAAGAAGCCGCACGACTCCCAGCGTAGAGGTGATGACGACGAGGTCCTGTCTGTCAGGAGTTCCGAAGGATGTGCTTCGGTCAAAGAAATGGAGACGAGGGTCGAGAAATTGGAAGACAGTTCCAATTCTGACTCCGACAGCAGTAGTTCTGGATCTGGCAGTTCCAGTTCCGGAACCAGCTCGTCATCGAGCTCTGGCTCCTCAAGTTCATCAGACAGTTCCGACACAGAGTCAGAATCTGGCGACGAGAAACCCAAGACTGAAGACCCATCACCGGTGGTCAATCATACGGCTACTGAAGATGATAGGTCGTTTGGCGCTTGGTCGTACAGCGGGCCGGCTTCCGACAGCGGGTCCGACTCGGATCCGGAACGCGCCGCGGATCCGGCAGCTCCAGGGTCGCACGATGAGATCAGCGAGTCCGAGAATGAATCCGCTGATAAGAGCTTCCAGTGTCATATCTGTTCAAAGTGGTATTCTACGAGAGTGACACTAAAAATCCACCGCCGCGTCCATCAGAACCGCGGCGGCGGCAACACGCGGTCGCGCGCGCGCTCCTCGGACAGGTACGAGTGCGACTGTTGCAGTGAGACTTTCAACAGGCGCGAGAAACTATGGGAGCACAAAGCCGAAGCACACCGCGGCGCCATGACAGTCCGATGTGAAGTCTGCCGGAAATGCTTCGAAGATGACGCAGAGCTAGCTGCGCATGATCTTACACACACTGCTGACGAACGAGCTGGGCGGTGTCCCACCTGCGGCCTGACGTTCCCGCGCTACGAGCTGCTGCGGCGCCACGCGGCGAGCGCGCACGGCGCCGCCCCGCCGCCCGGCGCCGCGCGCCTGCCGCACGCGTGCGCGCAGTGCGGCAAGCGCTTCTCGCACGCGCACTCCCTCACCAGGCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGTGAGTGCCACTACACCACCGCTAACACGCCCGGCGCCGCGCGCCTGCCGCACGCGTGCGCGCAGTGCGGCAAGCGCTTCTCGCACGCGCACTCCCTCACCAGGCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGTGAGTGCCACTACACCACCGCTAACACGCCCGGCGCCGCGCGCCTGCCGCACGCGTGCGCGCAGTGCGGCAAGCGCTTCTCGCACGCGCACTCCCTCACCAGGCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGTGAGTGCCACTACACCACCGCTAACACGCCCGGCGCCGCGCGCCTGCCGCACGCGTGCGCGCAGTGCGGCAAGCGCTTCTCGCACGCGCACTCCCTCACCAGGCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGTGAGTGCCACTACACCACCGCTAACACGCCCGGCGCCGCGCGCCTGCCGCACGCGTGCGCGCAGTGCGGCAAGCGCTTCTCGCACGCGCACTCCCTCACCAGGCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGTGAGTGCCACTACACCGCCGCTAACACGCCCGGCGCCGCGCGCCTGCCGCACGCGTGCGCGCAGTGCGGCAAGCGCTTCTCGCACGCGCACTCCCTCACCAGGCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGTGAGTGCCACTACACCGCCGCTAACACGCCCGGCGCCGCGCGCCTGCCGCACGCGTGCGCGCAGTGCGGCAAGCGCTTCTCGCACGCGCACTCCCTCACCAGGCACATGCACAACCACGCCAAGCAGCTCTACCGCTGCGTCGTGTGTGAGTGCCACTACACCACCGCTAACACGCCCGGCGCCGCGCGCCTGCCGCACGCGTGCGCGCAGTGCGGCAAGCGCTTCTCGCACGCGCACTCCCTCACCAGCCACATGCACAACCACGCCAAGCAGATGTTTTTGGCAGGCTGTACAAATCACTCACACTATTTACTCTCTTTGCAGGCATCATTCGCGCGAGCAGATCAACTGGCGCAGCATCTGAACAGCCACCTCGCGAACTACAAGCGCCTGAAGCCGTGA
- Protein Sequence
- MALCESQLDSALPQLKREESSSSDGSQKQTPEKKTKVEHNGEIYGLNQVPGGLPLTVDYRSPVSHFVPPELYAVRQKQEPISTAETSEPPTPVKRKRGRPRVDKTSPEYLANLAARKQAKEMAAMMNNRTPESGEKRKRGRPRVDKTSPEYLARKRARELEALERKAKREYKRRATGAKPISKTALQMSSRVKKRQLPANNKKMGVAMRKLPQKIANTVRMAGNNVRKVGDRKVLVRRTESRKFIKRKDSAASSSAGETTPRTKRKYTKRTPSAKKDAPPSTERVKGKRGRPRKVDQLAASNKQQQQPKIRVRNNLMPVNSEPITVDSDDEPDLGSPSQASDSLSLDENLRALRHIHEKYANIDKDDLYDTHLLAANFKKPHDSQRRGDDDEVLSVRSSEGCASVKEMETRVEKLEDSSNSDSDSSSSGSGSSSSGTSSSSSSGSSSSSDSSDTESESGDEKPKTEDPSPVVNHTATEDDRSFGAWSYSGPASDSGSDSDPERAADPAAPGSHDEISESENESADKSFQCHICSKWYSTRVTLKIHRRVHQNRGGGNTRSRARSSDRYECDCCSETFNRREKLWEHKAEAHRGAMTVRCEVCRKCFEDDAELAAHDLTHTADERAGRCPTCGLTFPRYELLRRHAASAHGAAPPPGAARLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCECHYTTANTPGAARLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCECHYTTANTPGAARLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCECHYTTANTPGAARLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCECHYTTANTPGAARLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCECHYTAANTPGAARLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCECHYTAANTPGAARLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCECHYTTANTPGAARLPHACAQCGKRFSHAHSLTSHMHNHAKQMFLAGCTNHSHYLLSLQASFARADQLAQHLNSHLANYKRLKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148005;
- 90% Identity
- -
- 80% Identity
- -