Bvim030095.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000341.1:208148-227738[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.1 8.7e+02 2.3 0.1 1 23 187 210 187 210 0.90 2 10 7.5 1.1e+03 2.0 0.5 1 23 242 265 242 265 0.92 3 10 0.0044 0.63 12.2 4.0 1 23 308 330 308 331 0.94 4 10 2.4e-06 0.00034 22.5 2.5 1 23 335 357 335 357 0.97 5 10 0.33 47 6.3 0.3 2 23 365 385 365 385 0.93 6 10 0.04 5.6 9.2 2.4 1 21 391 411 391 416 0.94 7 10 1.9e-05 0.0027 19.6 0.8 1 23 424 447 424 447 0.96 8 10 0.00016 0.022 16.7 3.3 1 23 453 476 453 476 0.98 9 10 8.9e-05 0.013 17.5 0.2 3 23 488 508 487 508 0.96 10 10 4.5e-05 0.0064 18.4 2.0 2 23 515 537 514 537 0.96
Sequence Information
- Coding Sequence
- ATGAGCGAAGATATAACTAAAAAGAAGGAATTAGTGAAGAAGGCCCTTTTCGGAGAAGTTATCAAAATTCAATTAGAGGAAAACTACACTAAAATAAAGAGTCATGAAGATAAAAGAAAGTTCAAACAAGCTATATCCGGAAATGTGATTCAAACAACCAGCCTGTCCCGCCTAGCTACACACCACAAGACTACCTACCAAAAAGTAATATCAGAATCAAACACTACTCCAACAGACAATTTCATAGACTGTGGTCTAACCACAGACATAAAAAGCGAAAGTGAAGAGGACATACCTCTGTCAGAACTGCACAACAACTGGCTTTCCGACAACGAGACAGAGATAGCCAGTCAAACCATAGACTGTAAAGAGGAACTGTCAAACTTAAAAGATGGCATAGACTACAATGAGGATTTATTGTACAAGatgaaaaaaaagagaaagaaaattaaaaatgtaaaaaagaagAGTTATTTTTCTACTATTTTGATAAATGATAGCGAGTTGGAAGAAATTAGGAGTAATAATAAATTGGCAGAGAATTTTGTAGATGCAGGGTTTAAGTGTGATAGCTGTATTGAAGGGTTTGGAAGTCAAGTGGAATTGGATGACCATAATTCATCTTTACATATAGAGAAACCAGACCACCTCCAATGCGATCTATGCCTAGTCTACACTCCCATAACATCATACCATGACCATAGACAAGCACATTACCATAGACATGTTTGTCAATTTTGTGTGTATACGGcctataatataaatgatattTTGTCACATTTGAGGAGTGGGCATGCTCTGAAGAATTTAGTTTTACCTGGAAAGAGGAAAAAGACTCGCCACAAAACTGCGGAAGATTTAAACCATGGTTCCAAACCTCGACGAAAACCCTCCATGTTGGACAAGCGAACGCCCTACGGATACCTGTGCACtgaatgtaataaatattttgaCAACAAGAATCAAAGATGGAAGCATGTACAGCGTCACCATAGGGAAGGTTACAAATGTACCACGTGCGGCAAAAGATTCGCTTTCAAGAACAACTTAACGAGACATGAGCAACTCCACCAAGGCCCCCCTCCCCGGGAAGAATGCCCTGTCTGCCACAAGATGATCCGCACAGATCTCGTCAAAGTACACGCTCGCATTCATGCAGACAGAGAGCGGTACACGTGCGCGGCGTGTGCCAAGTGCTTCGTCAGCCGCGCGTCCTATGAACACCACCTGAAGTACACCCAGGCACACGCACAAACTGACTTACACAAATATAAGTGCACAATGTGTGACAAAGGTTACCGGTCACGCGGAGAGTTGAGGGATCACGTCAACTATCAACACATGGGGAAGACTCAGCATAAATGCTCTGTTTGTGGGAAGGCTCTAGCGACTCGTCGCTGCGTCACCAGACACATGCGCCGCGCCCACGACGGTGTCAAGGAAAGCGCCAGAGACAAGATATGTCAACAATGTGGAAGGGCTTTTAGGGACAAGAAAGGCCTCCGCGAGCACGAACTTATCCATACAGGCGAGCGTCCTCTCTCGTGCGAGATCTGCGGCTGCACGTTCAGACAGAGCGCGTCTCTGTACACCCACAGGAAGCGAGTGCACAAGATATACACTAGCGCAAAGAAGGTAACGCTGTTAGAATAA
- Protein Sequence
- MSEDITKKKELVKKALFGEVIKIQLEENYTKIKSHEDKRKFKQAISGNVIQTTSLSRLATHHKTTYQKVISESNTTPTDNFIDCGLTTDIKSESEEDIPLSELHNNWLSDNETEIASQTIDCKEELSNLKDGIDYNEDLLYKMKKKRKKIKNVKKKSYFSTILINDSELEEIRSNNKLAENFVDAGFKCDSCIEGFGSQVELDDHNSSLHIEKPDHLQCDLCLVYTPITSYHDHRQAHYHRHVCQFCVYTAYNINDILSHLRSGHALKNLVLPGKRKKTRHKTAEDLNHGSKPRRKPSMLDKRTPYGYLCTECNKYFDNKNQRWKHVQRHHREGYKCTTCGKRFAFKNNLTRHEQLHQGPPPREECPVCHKMIRTDLVKVHARIHADRERYTCAACAKCFVSRASYEHHLKYTQAHAQTDLHKYKCTMCDKGYRSRGELRDHVNYQHMGKTQHKCSVCGKALATRRCVTRHMRRAHDGVKESARDKICQQCGRAFRDKKGLREHELIHTGERPLSCEICGCTFRQSASLYTHRKRVHKIYTSAKKVTLLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119731;
- 90% Identity
- -
- 80% Identity
- -