Bvim020991.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000209.1:577080-578270[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.16 23 7.2 3.3 1 23 77 100 77 100 0.94 2 10 0.11 15 7.8 0.0 2 23 127 149 126 149 0.95 3 10 0.34 48 6.3 0.1 2 23 172 193 171 193 0.96 4 10 2.6e-05 0.0037 19.2 0.3 1 23 197 219 197 219 0.98 5 10 0.047 6.7 8.9 2.3 1 23 224 247 224 247 0.84 6 10 0.18 26 7.1 4.8 2 23 255 277 254 277 0.85 7 10 2.5e-05 0.0036 19.2 2.4 2 23 285 307 284 307 0.95 8 10 3e-05 0.0043 19.0 4.9 1 23 313 335 313 335 0.97 9 10 6.2e-05 0.0088 18.0 3.6 1 23 341 363 341 363 0.98 10 10 9.3e-06 0.0013 20.6 2.9 1 23 369 392 369 392 0.98
Sequence Information
- Coding Sequence
- atGAAACCGACATCTGCCAAAGCAAACGACAAAAAAGATGTAAGGACAAAATTAAATACAGtccctaaaaaaaaaaccggtcagAGATCCATAGAAGAGGGTTTAAAGGCCCGAAGAGCCGGACCCATTACTGCTGACAAAATAGAATTAGACAAACATTTGCAGAATATTCGCAATATACTCTTACATTCCAATGCTTCTCCTATCAGGAGACACACAGCAGTTGGTTACCACTGTAGCTTCTGCTTAGAGCACTTTACCATACCGAGAGACCTGAAGATACATACACTACAAAACCATGACAACGAAACTAAAAGTACAGTTATGAAAGGCTGCCCCTTATCTGAATATGTCGTAAAACTTGACATCACTGGCCTGAAGTGTGAAATATGTGATCAAAATATTGATGGTTTAGAGCCACTGATGAATCATTTACGATctaatcacaataaaattttacatacagatataaaaaatcatattttgcCTTTTATATTTGAAGGGGACACGTTAAAATGCGTGCTATGCCCGAACATCTACGAAAGCTTTAAACTGATACAAGAACACATGAATGTACACTACAATAATTATATCTGCGAAATCTGCAACTCTAGTTTCGTTAGAAAGATAACTCTTAACAAGCATGTGGCTACACACAAACAAGGAGAGTTCTCTTGTAAGTTTTGTCCAAAAGTATTTGACACCAAGGTTAAGAAATTATACCATGAAAAATTTGTACATATTCTTGAccataaaagaaataaatgcCCACATTGCGATAAGAAATTTTCTTGTTACATGCAGAGGAATGAACATATGGTGAAAGAGCATGGTGCAGAGCCTCGTGTCCTCAAATGTATGGCTTGTGACAAGACGTTTACTTCTAAAGACAAATTGACTAAACACACTAAAAGGGATCACTTACTCGAAAGGAAACACGAATGCGAGCACTGTGAAATGAAGTTTTATAGAAAAGAAGATCTGAGAAATCACATGTTGAAACATACAGGAGACAAACAGCATAAGTGCGATGTCTGCCTCAAAGCTTTTGGACGCAAACATACTTTAAAGGAGCATTTGAGAATACATGCGAATGACAGGAGATTCAAATGCGACCAGTGTGGACAAGCGTTTGTGCAGAAATGCAGCTGGAGAAGCCATATGCGGATGCGACATGATGAGTGTGTTTAA
- Protein Sequence
- MKPTSAKANDKKDVRTKLNTVPKKKTGQRSIEEGLKARRAGPITADKIELDKHLQNIRNILLHSNASPIRRHTAVGYHCSFCLEHFTIPRDLKIHTLQNHDNETKSTVMKGCPLSEYVVKLDITGLKCEICDQNIDGLEPLMNHLRSNHNKILHTDIKNHILPFIFEGDTLKCVLCPNIYESFKLIQEHMNVHYNNYICEICNSSFVRKITLNKHVATHKQGEFSCKFCPKVFDTKVKKLYHEKFVHILDHKRNKCPHCDKKFSCYMQRNEHMVKEHGAEPRVLKCMACDKTFTSKDKLTKHTKRDHLLERKHECEHCEMKFYRKEDLRNHMLKHTGDKQHKCDVCLKAFGRKHTLKEHLRIHANDRRFKCDQCGQAFVQKCSWRSHMRMRHDECV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039226;
- 90% Identity
- iTF_01093475;
- 80% Identity
- -