Bvim020984.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000209.1:543581-544648[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00095 0.14 14.3 0.2 1 23 32 55 32 55 0.94 2 10 0.0077 1.1 11.4 0.1 2 23 86 108 85 108 0.94 3 10 1.2 1.7e+02 4.6 6.4 2 23 131 152 130 152 0.97 4 10 0.0043 0.61 12.2 0.0 1 23 156 178 156 178 0.96 5 10 0.057 8 8.7 4.5 1 23 183 206 183 206 0.88 6 10 0.24 35 6.7 0.4 2 13 214 225 213 236 0.86 7 10 3.1e-05 0.0044 19.0 1.3 2 23 244 266 243 266 0.97 8 10 0.00022 0.031 16.3 1.1 1 23 272 294 272 294 0.98 9 10 1.1e-05 0.0016 20.4 0.8 1 23 300 322 300 322 0.98 10 10 2.2e-06 0.00032 22.5 1.3 1 23 328 351 328 351 0.98
Sequence Information
- Coding Sequence
- ATGATGGAAGAAATGAAGAAGCaccacaaaaatttaaaagaaattttaacttGCTCCAATGCTACGCCCTTTGTAGGAGTCAATTATCTAGGTTATTTGTGTTCCTACTGCGATTCTCAGTATCCAGACCCTGCAGCCCTGAAGAAACATACTCGTGACAATCACAAAGGCTTATACAACTTAGTAATcccacaaaataataaatctaaaatcGGAACAGACAAGTTTTGTATAAACTTGGACATAACTGATTTACGATGCACACTCTGCGACACTGACATAAACACATTAGAAAATTTGATAAAACATCTAGAAAATGACCACAAAAGGGGAATATATACGGAAATTAAAAACCAACTCTTACCATTTAAGTTTTTCAGTGATACCATGAAATGTTGTGTGTGTTCAAGCAAATTTCATAAGTTTAGAGGCTTGCTAAAGCATATGAAAATACATTATAGGAATTTTATTTGCGATGAGTGTGACATGGGATTTATAACCAAAGCAAGCATCAGGGGACACGTCGCCTCACATATAATAGGCGTTTATAAATGTAATTTGTGCTCAAAAACCTTTGAAACTAAGCGGAAGGCACAATGTCATGAAAAGACGGTTCACGTACATAAGCATATGATGAATAAGTGTGGGTACTGCAATGAGAGATTTAAGAATCATATAAGAAAGGATGAGCACTTGGTGGAAATACATGGAGTCAAGTTGAAGGTTGTCAAATGTCATGCGTGCGACAGGACGTTTCCTAACACAAGCGCACTAAGGATCCACACGAGAAGAGACCACTTGATCGAGCGACGGTTCAAATGTACGCAATGCGATAAGGCATTTTTCAAAGCTGCCGATTTAAAGTTTCACATGGTAACGCATACAAAAACAAGAGAGTTCCAATGCACTGTGTGCCTAAAGTCATATGGTCGGAAGGAAACTTTAAGGCAGCATATGGAGATACACAGTGACATTAGACGGTTTAAATGCGAGCACTGCGGTCAGGCATTTGTGCAGAAAGCGAGCTGGAAGGGGCACATGAGGAGTAGGCACGGTGAACTGCTCTGA
- Protein Sequence
- MMEEMKKHHKNLKEILTCSNATPFVGVNYLGYLCSYCDSQYPDPAALKKHTRDNHKGLYNLVIPQNNKSKIGTDKFCINLDITDLRCTLCDTDINTLENLIKHLENDHKRGIYTEIKNQLLPFKFFSDTMKCCVCSSKFHKFRGLLKHMKIHYRNFICDECDMGFITKASIRGHVASHIIGVYKCNLCSKTFETKRKAQCHEKTVHVHKHMMNKCGYCNERFKNHIRKDEHLVEIHGVKLKVVKCHACDRTFPNTSALRIHTRRDHLIERRFKCTQCDKAFFKAADLKFHMVTHTKTREFQCTVCLKSYGRKETLRQHMEIHSDIRRFKCEHCGQAFVQKASWKGHMRSRHGELL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00746092;
- 90% Identity
- -
- 80% Identity
- -