Bvim020976.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000209.1:496793-503090[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.028 4 9.6 0.7 1 23 10 33 10 33 0.95 2 15 0.0013 0.19 13.8 0.6 1 23 133 155 133 155 0.96 3 15 0.34 49 6.2 1.8 1 23 160 183 160 183 0.94 4 15 0.19 27 7.0 1.0 1 23 190 213 190 213 0.93 5 15 0.00026 0.036 16.1 0.4 1 23 220 243 220 243 0.96 6 15 3e-05 0.0043 19.0 5.7 1 23 249 271 249 271 0.97 7 15 0.13 18 7.6 1.1 1 14 277 290 277 292 0.91 8 15 0.0074 1 11.5 0.9 1 23 359 382 359 382 0.95 9 15 0.0025 0.36 12.9 0.8 1 23 482 504 482 504 0.96 10 15 3.1 4.4e+02 3.2 2.8 1 23 509 532 509 532 0.93 11 15 0.84 1.2e+02 5.0 2.7 1 23 539 562 539 562 0.94 12 15 0.00019 0.026 16.5 2.3 1 23 569 592 569 592 0.97 13 15 0.013 1.9 10.7 1.0 1 23 598 620 598 620 0.95 14 15 1.5e-06 0.00021 23.1 1.6 1 23 626 648 626 648 0.99 15 15 1e-06 0.00015 23.6 0.3 1 23 654 677 654 677 0.97
Sequence Information
- Coding Sequence
- ATGATACTCAAACACGGAGATAAGGGATATTTGTGCTGCTATTGCACGGCGCCTTTCCAAGAACCCATGAATTTGAAAGTACACACTTTGACGGAACATCAAAATGCAGAAAAGTTCTATGGCAACATTAAAGCCAGAGGACCATCTAGGTTCTTAGTTAAACTTGACATCACAAACCTGAAATGCATGCTTTGCAGCACCAATATAGACTCTCTCGAAGATGTATTCGTCCACCTGACAGAGACACATAATAAGAACTTCCACACTGAtatacaaaatcaaatatttcCTTTCAAGTTCAATACGAAGCAACTGAAATGCTGCCAATGTACTAATGACGGCGTTTTCGCCACGTTCAGCGCATTACACGAGCATATGCATAAGCACTACCGATACTTCGTTTGTAACGAGTGTGATGCTGGATTCATCAATCATGAAACATTATCCAAACATAACGTTACTCACACGAAAGGGTCATTCGTCTGCCGACATTGCCCTGTAGTATTCGACAATGTGTTCAAGAGAAGAAACCACGAGATGCGGAGCCATACTCACACTGACAAATCATATTTATGCCATTTATGCAATGAGGGTTTTAAAGAATATGTAACGAAGGAATTACATATGTCTTCAGTTCATGGCGTTGCTCCACGGAAATATAACTGCGCCGCGTGTGACAGGAGCTTTCCTTCCAATAGTTTTCTTAGTGCACATGTCAGACGCTTCCATCTGATGGAGAAAAGTCACAAATGTTCAGAGTGCGACAGAGCGTTCTTCAGAGCAAGCCACCTAAAGAAACACAAGTTGAGTCATACAGGGGCTAAAGATTTCAAATGTGAAGTGTGTTCAAAGCATTTTGCCAATAAACAAGAAAAAGTGGCTACAGCTACGATCGTCAAAATAGAGCCGAAAGCTGAAGAAACTGTAGTATCTAAAGAAgaggatataaaaaaaaatcccgaGACAGCGCCTCGACCACGCGTAAAGCGACTACTACACAAGCATCTACACAATCTGAAAATAATCCTAGAATCTACTAACGCCACGATGATACTCAAACATGGAGATATGGGATATCTGTGTTGCTATTGCACAGAAGCTTTCCAAGAACCCATGAATTTGAAAGTACACACTTTGACGGAACATCAGAATGCAGAAAAGTTCTATGGAAACATTACAGCTAATGGACCATCTAGGTTTTTAGTCAAACTTGACATCACGAATCTGAAATGCATGGTTTGCAGCGCCAATATAGATTCTCTCGAAGATCTATTCGAACATCTGACTGAAACACATAATAAGAACTTCCACACTGAtatacaaaatcaaatatttcCTTTCAAGTTCAATGCGAAGCAACTGAAATGCTGCCAATGTACTAATGACGGCGTTTTCGCCACGTTCAGCGCATTACACGAGCATATGCACAAACATTACCGGTACTTCGTTTGTAACAAGTGTGATGCTGGATTCATCAATCATATATCATTATCCAGACATAGCGTTACTCACACGAAAGGAACCTTCGCCTGCCGACATTGTCCCTTTGAATTCGACAATGTATTCAAGAGAAGAAACCACGAGATGCGCAGCCATACTCACACTGGCAAATTACATATATGCCATTTCTGTAATGAAGGTTTTAAAGAATATGTTACGAAGGAATTGCACCTGTCTACGGTTCATGGCGTTACTCCACGGAAATATAACTGCACCGCGTGTGACAGGAGCTTTCCTACCCATAGTTTTCTTAGCGTACATATCAGACGCTTCCATCTGATGGAAAAACGTCACAAATGTATTGAGTGCAATACAGCGTTTTTTAGGGGTGGCGACCTAAAGAAACATTTGTTGATTCATACAGGGGTTAAAGATTTTAAATGTGTAGTCTGTTCCAAGAATTTCGCTAAGAAATCCACTCTTACTCAGCATATGAGGATACATAACAATGATAAGCGTTTTAAATGTACAATATGTGATCAGGCGTTTGTGCAAAAACCTAGCTTGACCTGGCATATGAGGGCAAAGCACGAAGATGTTTGTACTACTTAA
- Protein Sequence
- MILKHGDKGYLCCYCTAPFQEPMNLKVHTLTEHQNAEKFYGNIKARGPSRFLVKLDITNLKCMLCSTNIDSLEDVFVHLTETHNKNFHTDIQNQIFPFKFNTKQLKCCQCTNDGVFATFSALHEHMHKHYRYFVCNECDAGFINHETLSKHNVTHTKGSFVCRHCPVVFDNVFKRRNHEMRSHTHTDKSYLCHLCNEGFKEYVTKELHMSSVHGVAPRKYNCAACDRSFPSNSFLSAHVRRFHLMEKSHKCSECDRAFFRASHLKKHKLSHTGAKDFKCEVCSKHFANKQEKVATATIVKIEPKAEETVVSKEEDIKKNPETAPRPRVKRLLHKHLHNLKIILESTNATMILKHGDMGYLCCYCTEAFQEPMNLKVHTLTEHQNAEKFYGNITANGPSRFLVKLDITNLKCMVCSANIDSLEDLFEHLTETHNKNFHTDIQNQIFPFKFNAKQLKCCQCTNDGVFATFSALHEHMHKHYRYFVCNKCDAGFINHISLSRHSVTHTKGTFACRHCPFEFDNVFKRRNHEMRSHTHTGKLHICHFCNEGFKEYVTKELHLSTVHGVTPRKYNCTACDRSFPTHSFLSVHIRRFHLMEKRHKCIECNTAFFRGGDLKKHLLIHTGVKDFKCVVCSKNFAKKSTLTQHMRIHNNDKRFKCTICDQAFVQKPSLTWHMRAKHEDVCTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00238043;
- 90% Identity
- -
- 80% Identity
- -