Bvim017945.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000170.1:41932-43167[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00027 0.038 16.0 0.7 2 22 110 130 109 133 0.89 2 10 0.15 21 7.4 0.1 3 23 137 158 136 158 0.95 3 10 0.0009 0.13 14.4 2.2 1 23 163 186 163 186 0.95 4 10 0.0017 0.25 13.4 0.8 2 23 192 213 191 213 0.94 5 10 0.5 71 5.7 1.2 2 20 217 235 217 237 0.91 6 10 1.5e-06 0.00022 23.1 1.2 1 23 263 286 263 286 0.95 7 10 0.00011 0.016 17.2 0.5 1 23 292 314 292 314 0.95 8 10 0.035 4.9 9.4 0.1 1 23 320 342 320 342 0.97 9 10 0.0018 0.26 13.4 0.3 1 23 348 371 348 371 0.94 10 10 5.5e-05 0.0078 18.2 0.8 2 23 378 400 377 400 0.95
Sequence Information
- Coding Sequence
- atgaAAGAAGAATCCTTAATACCAGTAGGTGCGTGTGTCGCCTGCGCCAGTACAGCCCTCGCAGCGCAAGAATTCCGCCTCTTTGTCAGGAGTTCAGAGAAACTATGGCGCAAAGCTCTCATCAATATAGCTACCTTGCCGAACTCAGTATTTGCTCCGTCCGTCAAATCAGTCTGCGCATTCATCAAAACATCAGACCTCTCGATACAAACATTCAAGGACTACAACACAAGCGACGCCAAAACGATCATGAATCGATTAAAAAATCGAGTCGCGAAAAAACCAGTCGGGAGAAAGCCTAGAGGGGCGCGCACTGGACCGTCATGCAGTTGTCCTGACTGTGGAAAGGGCTTCCTAAGTCCGTACTACTTAAATATGCATTTACGAAATAGTGGGCATAAGGAGGCCTGTCTTCTTTGTGGATCAGTCTTCGTTAGAGGGAAAGAAATGCAAGAACATCTGTCTTCTGTTCACAATGAGATTGCATTCCTATGTAAAAAATGTCCAATTATATGCTCAAATGAAACACAGTTGAAAAAACACGTGAAAAAGGCCCACAAAGCGGGAGCGTTGACATGTGCAGATTGTGGTAGGACGTTCCCTAGAAATGCTTCCTTTGAATGTCATGCACAAATGCACGCAGTCAGGACTTGCCGCGCTTGCGGCGTACAGTTCACCAACCGAGGGTGTTATAGAGAACATAGGTCTCAATGCGAACCAGATGCTAAGCCTAATGCTCAAGATGTACCTAGAAACCGACGCTCCAACATCCGCGACCCTGCGACCTTCACTTGTGACCATTGTGGCAAAACTTATAACTCTAGACCTCAACTCAAAAACCACATCCTCTGGATTCACATGGATATACGACCTCATCAGTGTACGTGGTGCGGAAAAAGGTTTTACACTCCTGCACGACTGGCAGAACATACTGTAGTTCATACCCGCGTTCGAAATTTCGAATGCGACATTTGTGGCGCGAAACTCGTTTCGAAAATGGCCGCCGTGTACCATAGACGAAGGCATACGGGTGAGAGGCCGTATGAATGTGAAGATTGTGGCGAAAAGTTTATTTCTGCATCTCGTAGGTCGGAGCATGCTAAGCGTAGACATAATAAAGGATACAGGCTGCCTTGTCTGAAGTGTCCTGCTAATTTTGTTAGAAAACATGAGTTGAAAAAGCATATGGAGAAGGCTCATAAAGCGCCAGAAAATGCTCTAGGTTGGCCACAGTGA
- Protein Sequence
- MKEESLIPVGACVACASTALAAQEFRLFVRSSEKLWRKALINIATLPNSVFAPSVKSVCAFIKTSDLSIQTFKDYNTSDAKTIMNRLKNRVAKKPVGRKPRGARTGPSCSCPDCGKGFLSPYYLNMHLRNSGHKEACLLCGSVFVRGKEMQEHLSSVHNEIAFLCKKCPIICSNETQLKKHVKKAHKAGALTCADCGRTFPRNASFECHAQMHAVRTCRACGVQFTNRGCYREHRSQCEPDAKPNAQDVPRNRRSNIRDPATFTCDHCGKTYNSRPQLKNHILWIHMDIRPHQCTWCGKRFYTPARLAEHTVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECEDCGEKFISASRRSEHAKRRHNKGYRLPCLKCPANFVRKHELKKHMEKAHKAPENALGWPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00786248;
- 90% Identity
- iTF_00273866;
- 80% Identity
- -