Basic Information

Insect: Brachylomia viminalis
Gene Symbol: -
Assembly: GCA_937001565.2
Location: CAKZJP020000528.1:603684-604754[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.11 15 7.8 0.0 3 23 85 106 83 106 0.94

2 9 0.0026 0.37 12.9 3.8 1 23 128 150 128 150 0.96

3 9 5.4e-05 0.0076 18.2 0.6 1 23 154 176 154 176 0.98

4 9 0.0035 0.5 12.5 0.3 1 23 181 204 181 204 0.92

5 9 2.9e-05 0.0042 19.0 2.1 1 23 210 233 210 233 0.98

6 9 0.055 7.8 8.7 1.8 1 23 240 263 240 263 0.94

7 9 0.00011 0.016 17.2 1.5 1 23 269 291 269 291 0.96

8 9 4e-07 5.7e-05 24.9 1.0 1 23 297 319 297 319 0.99

9 9 1.6e-07 2.3e-05 26.2 2.7 1 23 325 347 325 348 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.11	15	7.8	0.0	3	23	85	106	83	106	0.94
2	9	0.0026	0.37	12.9	3.8	1	23	128	150	128	150	0.96
3	9	5.4e-05	0.0076	18.2	0.6	1	23	154	176	154	176	0.98
4	9	0.0035	0.5	12.5	0.3	1	23	181	204	181	204	0.92
5	9	2.9e-05	0.0042	19.0	2.1	1	23	210	233	210	233	0.98
6	9	0.055	7.8	8.7	1.8	1	23	240	263	240	263	0.94
7	9	0.00011	0.016	17.2	1.5	1	23	269	291	269	291	0.96
8	9	4e-07	5.7e-05	24.9	1.0	1	23	297	319	297	319	0.99
9	9	1.6e-07	2.3e-05	26.2	2.7	1	23	325	347	325	348	0.95

Sequence Information

Coding Sequence: ATGATCTCTACAGCACGAGAGGGCTACCAGAGACGGGCTATCTTCAGAAATAATATAGCAATCATCATGGAATCGTGCACCGCGTACCCTTTTAAGTATAGAAAAGGGACTTACCTGTGTTTCTTCTGTAAAAACACTTTTCTAGAACCAGAAAAGTTGAGAGAACACAACCAACTCCAACACTCCGAAGTAAAAACGTTACTAAAGCCCAGAAAGTATGAACCCCTAAAAATGGACTTCGCTACGACCATTTGCAAAATGTGCGGCATAGAAATTGGTGATTATGCTGAACTCAAAATCCACCTGACGGTCGAACATGGCAAGATAATAGACTGCACTTACGGAGACAGCGTGCTTCCATACAAACTGAGCAAAGAGGAACACAGCTGTCAAATATGTGGGAAAACGTACGAAATGTTCCTGAGTCTACACAAACATATGAATGATCattacgaacattttatttGTGAAACTTGTGGAAAGAGATTCGCGACTTCTCAACGGATGGTGAACCATGCTAGGACTCATGAAAGAGGAGACTTCCCTTGCAAACGGTGTACAGAAACGTTCCCGTCTTACGCTTCGTTATACGCTCACAACGCTAAAGTCCATAGGTCAAACAAGAGGTACAAGTGTCCTATATGTGACGAGAAATTCGCCTCTTACAAGCATAGGTTGAAACATTTAAATACCATACACGGAGAGAAGACTGCTGTCTTTCCCTGTCCGTCATGTCCAAGAGTTTTCGACTTATGCAGCCGAAGGACATCCCACATACGATTCCAACATTTACAAGAACGAAATCATGTCTGTTCAATTTGTGGAATGAAGTTCTTCACGAACTATGAGTTGCAGGAGCATTCTATCAAGCATGGAGGGGAGAGAATATACCAATGCGATGTTTGCAAGAAATCTTACGCGAGGTTAAAGACTTTGAGAGAGCATATGCGGATACACAATAATGATCGACGGTTTATATGCCCAATTTGCGGACAGTCCTTCATTCAGAACTGCAGCCTAAAGCAACATATGAGGGTTCATCATCCTGCTCATTTGAAAGACGTGTTTtag
Protein Sequence: MISTAREGYQRRAIFRNNIAIIMESCTAYPFKYRKGTYLCFFCKNTFLEPEKLREHNQLQHSEVKTLLKPRKYEPLKMDFATTICKMCGIEIGDYAELKIHLTVEHGKIIDCTYGDSVLPYKLSKEEHSCQICGKTYEMFLSLHKHMNDHYEHFICETCGKRFATSQRMVNHARTHERGDFPCKRCTETFPSYASLYAHNAKVHRSNKRYKCPICDEKFASYKHRLKHLNTIHGEKTAVFPCPSCPRVFDLCSRRTSHIRFQHLQERNHVCSICGMKFFTNYELQEHSIKHGGERIYQCDVCKKSYARLKTLREHMRIHNNDRRFICPICGQSFIQNCSLKQHMRVHHPAHLKDVF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01416159;
90% Identity: iTF_00908208;
80% Identity: -