Basic Information

Insect: Brachylomia viminalis
Gene Symbol: -
Assembly: GCA_937001565.2
Location: CAKZJP020000209.1:482953-492154[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.4 57 6.0 1.7 1 18 66 83 66 83 0.95

2 12 0.017 2.4 10.3 0.3 2 23 116 138 115 138 0.95

3 12 0.00013 0.018 17.0 3.7 1 23 230 253 230 253 0.94

4 12 0.017 2.4 10.3 0.3 2 23 280 302 279 302 0.95

5 12 0.005 0.7 12.0 3.0 2 23 325 346 324 346 0.96

6 12 0.00029 0.041 15.9 0.1 1 23 350 372 350 372 0.95

7 12 0.0044 0.62 12.2 0.9 1 23 377 400 377 400 0.97

8 12 0.0011 0.16 14.1 1.5 1 23 407 430 407 430 0.95

9 12 0.00095 0.14 14.3 0.9 2 23 438 460 437 460 0.95

10 12 0.0002 0.028 16.4 2.3 1 23 466 488 466 488 0.97

11 12 0.00042 0.059 15.4 1.3 1 23 494 516 494 516 0.99

12 12 7.6e-07 0.00011 24.0 2.1 2 23 523 545 522 545 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.4	57	6.0	1.7	1	18	66	83	66	83	0.95
2	12	0.017	2.4	10.3	0.3	2	23	116	138	115	138	0.95
3	12	0.00013	0.018	17.0	3.7	1	23	230	253	230	253	0.94
4	12	0.017	2.4	10.3	0.3	2	23	280	302	279	302	0.95
5	12	0.005	0.7	12.0	3.0	2	23	325	346	324	346	0.96
6	12	0.00029	0.041	15.9	0.1	1	23	350	372	350	372	0.95
7	12	0.0044	0.62	12.2	0.9	1	23	377	400	377	400	0.97
8	12	0.0011	0.16	14.1	1.5	1	23	407	430	407	430	0.95
9	12	0.00095	0.14	14.3	0.9	2	23	438	460	437	460	0.95
10	12	0.0002	0.028	16.4	2.3	1	23	466	488	466	488	0.97
11	12	0.00042	0.059	15.4	1.3	1	23	494	516	494	516	0.99
12	12	7.6e-07	0.00011	24.0	2.1	2	23	523	545	522	545	0.97

Sequence Information

Coding Sequence: ATGAGTAAACTCAGTTGTGGTCAACAAATAGCAGTTGTGGAAAAAGAAACAAACGGCAAAGAACTTACGGAAAATAAAGGTaaaaaagaagtaaaaataaCACCAAGAACCGAATTGATAAAACATCAAAGTAGCATTAAAGAAGTCCTTCTTAATTCTAACGCGACGCCTGTAAGACGGTACGCAGGGATCGGATACACGTGCTGCTACTGTCCAAACCAGTTCGAACACCCTGCAGATCTTAAGAAACTTACTCTAGAGAACCACAGAAATATCTCGGAAGCAAGCTTTATGAAGAATATGAACATGTCCGAATATATTGTCAAGATAGACATAACTGAATTAAAATGCAAGCTTTGCGACACTAATATGAATACTCTAGATAACTTAATAGACCATCTTCAAAATGTACATGTGATAAACATCGACAAAGACCATATAAACCATATATTTCCTTTCAAATTCGGCAACGATTTGCTGTCATGCACTGTTTGCTCGAACACTTTTAGTGGTCAACAAATAGCAGTTGTGGAAAAAGAAACAAACGGCAAAGAACTTACGGAAAATAAAGGTaaaaaagaagtaaaaataaCACCAAGAACCGAATTGATAAAACATCAAAGTAGCATTAAAGAAGTCCTTCTTAATTCTAACGCGACGCCTGTAAGACGGTACGGAGGGATCGGATACACGTGCTGCTACTGTCCAAAACAGTTCGAACACCCTGCAGATCTTAAGAAACATACTCTAGAGAACCACAGAAATATCTCGGAAGCAAGCTTTATGAAGAATATGAACATGTCCGAATATATTGTCAAGATAGACATAACTGAATTAAAATGCAAGCTTTGCGACACTAATATGAATACTCTAGATAACTTAATAGACCATCTTCAAAATGTACATGTGATAAACATCGACAAAGACCATATAAACCATATCTTTCCTTTCAAATTCGGCAACGATTTGCTGTCATGCACTGTTTGCTCGAACACTTTTAGTAAGTTTAGGACCCTTGTTAGACATATGCATATTCATTACAGGAATTACATTTGCACAGTTTGCGACACCGGATTCGCGAATCGAAACTCATTAGCACAACATTTAGTCAATCACAAAACAGGGACATATGTTTGTGACTACTGTCCAAAATTCTATCCTACTTTAGTAAAAAAACGAATGCACGAAAGGACATCACACACACACGTCCGTGCTACTTATAAATGTGGCTACTGTAAGGAAACTTTTAAAGATCATGGACAAAAGGAAGCCCATGTAACTTCTGTACATGGTGTGGCATCATTGAAAACTGTATGTCAAGCTTGCAACAAAGTATTTCCCAGTCGGAAGAAGTTTAACATACACCTTAAAAGAGATCATCTAATGGAGAGGCCACACAAATGTAAGGAGTGTGACATGGCGTTTTATTCAACGACAGGGCTAAAAAGTCATATGGTCAAACACACAGGGTTGAAAGAGTTTCAGTGCTCAGTATGTCAGAAGAAATATGGATGGAAGAAGACACTGAACGCTCACATGCAGACACATTCTGAGGAGAAGAGGATCAAATGTGAAAAGTGTGGACAGAAATTTACGCGGAAAAGCAGTTGGAAAGTTCATATGCGATCCAAACACGaagaaattgtttaa
Protein Sequence: MSKLSCGQQIAVVEKETNGKELTENKGKKEVKITPRTELIKHQSSIKEVLLNSNATPVRRYAGIGYTCCYCPNQFEHPADLKKLTLENHRNISEASFMKNMNMSEYIVKIDITELKCKLCDTNMNTLDNLIDHLQNVHVINIDKDHINHIFPFKFGNDLLSCTVCSNTFSGQQIAVVEKETNGKELTENKGKKEVKITPRTELIKHQSSIKEVLLNSNATPVRRYGGIGYTCCYCPKQFEHPADLKKHTLENHRNISEASFMKNMNMSEYIVKIDITELKCKLCDTNMNTLDNLIDHLQNVHVINIDKDHINHIFPFKFGNDLLSCTVCSNTFSKFRTLVRHMHIHYRNYICTVCDTGFANRNSLAQHLVNHKTGTYVCDYCPKFYPTLVKKRMHERTSHTHVRATYKCGYCKETFKDHGQKEAHVTSVHGVASLKTVCQACNKVFPSRKKFNIHLKRDHLMERPHKCKECDMAFYSTTGLKSHMVKHTGLKEFQCSVCQKKYGWKKTLNAHMQTHSEEKRIKCEKCGQKFTRKSSWKVHMRSKHEEIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -