Bvim009981.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000089.1:1285506-1293742[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.0038 0.54 12.4 5.3 1 23 202 224 202 224 0.98 2 28 0.00078 0.11 14.5 1.1 2 20 253 271 252 273 0.92 3 28 2.9e-05 0.0041 19.0 0.2 2 23 304 326 303 326 0.96 4 28 0.76 1.1e+02 5.1 0.9 1 23 376 399 376 399 0.92 5 28 0.18 25 7.1 0.3 1 23 419 441 419 441 0.95 6 28 0.00059 0.084 14.9 3.9 1 23 481 504 481 504 0.95 7 28 0.11 15 7.8 3.7 2 23 544 566 544 566 0.97 8 28 0.0025 0.36 12.9 0.6 1 23 616 639 616 639 0.97 9 28 0.0046 0.65 12.1 0.2 1 23 691 713 691 713 0.97 10 28 0.0078 1.1 11.4 8.2 1 23 724 746 724 746 0.97 11 28 0.061 8.7 8.6 0.6 2 23 758 779 757 779 0.95 12 28 0.0045 0.65 12.1 0.5 1 23 789 811 789 811 0.98 13 28 5.2 7.4e+02 2.5 7.3 1 23 840 862 840 862 0.93 14 28 0.0037 0.52 12.4 2.8 1 23 873 895 873 895 0.97 15 28 2e-05 0.0028 19.6 0.5 1 23 903 925 903 925 0.98 16 28 0.00075 0.11 14.6 0.2 2 23 945 967 944 967 0.97 17 28 1.2 1.7e+02 4.5 0.3 1 23 985 1007 985 1007 0.90 18 28 0.013 1.9 10.7 3.4 1 23 1014 1036 1014 1036 0.97 19 28 0.007 1 11.5 3.2 2 23 1047 1069 1046 1069 0.95 20 28 0.017 2.4 10.4 0.2 2 23 1092 1113 1091 1113 0.95 21 28 1.6 2.2e+02 4.2 3.6 2 23 1156 1178 1155 1178 0.95 22 28 0.0066 0.93 11.6 0.2 2 23 1194 1215 1193 1215 0.95 23 28 3.8 5.4e+02 2.9 4.1 5 23 1225 1243 1222 1243 0.94 24 28 0.016 2.3 10.4 0.8 2 23 1254 1276 1253 1276 0.95 25 28 0.45 64 5.9 3.1 2 23 1293 1311 1293 1311 0.90 26 28 0.36 51 6.2 1.9 2 21 1315 1334 1314 1335 0.94 27 28 0.54 77 5.6 0.9 2 23 1384 1405 1383 1405 0.93 28 28 0.0036 0.52 12.4 0.5 2 23 1416 1438 1415 1438 0.95
Sequence Information
- Coding Sequence
- ATGGCCCTCAAGCTTGGAAAATGCAGGCTCTGCCTCAAGCTTGGCGACTTTTACTCCATCTTCACGATCGACAATGCTTTGCAGCTCGCGGAGATGGCAATGGAATGCGCCCGGGTGAAAATATACGACGGCGATGGGCTGCCTGACAAGGTGTGCTCGGAGTGCATACAGAAGCTCAGCAGCGCGCACATCTTCAAACAACAGTGTGAGCGAGCTGATCAGGAACTACGCCGCAACTACGTGCCCCCACCCGGATTCAGCATCAGCCCGCCGCCAGCCAACAGGCAGAGCAGCGATTCCGCCTTTTCAAATCATACAGACACCTCCAACTTAACCAAACCCTCGTCTTCCATCGAAGAGAAAGTCACCCCCGCCACTAGAACCCGGAAACGTAGCGCGGACAGCGTCGACAATGCATCCACTGGTGGCGCGTCCAGCGATTACAGACCCAGCGGCTCCAAACGCGTCGAGGAACTCAGACGCACCCACAAGCGACCCCGAAGACTGTCAGGACACATCTCGCAATTAGATTCAGATTACGAAGACAACTGCGCCTCATACTTACCCGACACCGACTCCGACGAGCCCTTACTTAAAAATAGCTTCAATTGTGATCAATGCCACAAACATTTCCAATCCCAAAGAAGCCTCGCTATCCACAAGAGGGTACACGACAAAAAAGAAAGTCTTGGCGAAAACGCCGTCGTTGTTATTCCGCAGAAGATAGAGGACGCGAGCGACGTAGAAGACAAATTGAACTGCGACAAATGTGGCAAGTCGTTCAAGTTAAAGATCATGCTGAAACGTCACCACGAAATTTGCGGGAAGACTACAAGTCCCGTTAAGACTCTACAGAAAGAGTTGCTCATCTCTTTAGAACCGATCGATGGTGTGAAGAACCGAAACATCGTGTGCGAAATATGCTCGACCAAATTCAAGACTATTGATAATTTGGCAAAGCATATGAAGGTGGTTCATGCTGCAGTCTTGAAAAAAGAAAATCTTGATAAACAGGAAAATGGAAATGTGACAGTTCCGTGCATGTACTGCAAGAAGCAGTTCGACGATTACTATGTTCACAGTGCGCATTTCAACAAGTGTCCGAAAAGGGACGACTCATTGTCGTACGAGTGTCCCATTTGTAAGAAGTTGGTGTTGAGAAAGAACTCTTATTTCTTACATCTTAAGAACATGCACTTTGAGCCTCGGATGTCGCTGAAGAGTTCGGTGGAGCCTGAGACACAGCAGGAGTACCATGAGTGTAGGATGTGCTTAAAGAAGCTCCCCTCGCAAGAGTTGCTGATCACGCATCTGGCGGCGCACATGTCGAATATCGATGACAATGATGGTGGAGCCGACAACGAATCTAGAGCAAGCACCATAGACGACACCGCGTCTATCCAATCAGTACATAGCCAATCTCGCACACCCACCGGTCAATTTAATTGTCCAACATGTGACAAAGAGTTCAAATACAAGAAAGCTCTTCAAACGCACAAGGCTCGGTGTCATTCAGAAGTACCTGTGCAAGTGAAGATAGAACCGCCTGATAAGGCATCGACAAGTCTCTTGAGCGAGACGGCCTTTAGGCAGACTGAGTCAGAATCTAGTCAAGAAGAGGATGACAACACATGTGATATCTGTGAGAAACAGTTCTCGTATCGCCGGATCCTTCTCCACCACAAGCGGACCAAACACAACATGAGCTCGGGACACAAGCGCGCCAAAATCTACCTCAAAGACTGCTCCGTGCGCTGCCTCATCTGCGACCTCGACATGAAGGTTGGCGCTATCAACGAACACAACCAGACGCATATTTCAAAAAACATGAAGCCTAGGAACCTATACACCTGTGCCGAGTGCGAGGATACCTTCAAGAGCTGTTCTGCTCTTGCAAACCATATAAAGCTGATTCACAGACTAAAACAGAAACGGATCGAAGATACTGTGAACCCGTCGGATTTTTGTGAAGTCGTTGTGGCAAAAGCGGAACCCCTGGACTGCATCCAGAGTCACAACGACTTTGGTGAGGTTCCGGGCGAGGGCAAGCCGTTAGTAGATCTTAGCGGCTTTACCTGTCCCATCTGTAGCAAGAAGATGCCGACCCTGATATCTTTGAAGAGGCACGTCAACTGGCACTCTAATGTAGGCAATAATATTGAGAAGAAGCACGAGTGTTCCGTCTGTAAGGAGTCCTTCAAGTTCCAGTGCCACTACAAGATCCACATGCGCGAGCACTACCGCGACACCAACCTCGACCCCAAGCACCTCACGTGCGCCATCTGCGGTCGCCGCAGCAAGCACCTCCGCGCCGCGCAGGCACACATGACCTACCACAAGCAGACGCGCTTCCAGAACAAAGACTACCAGTGCTCCATCTGCGAGAGAGTCTTCCAATACCGCAAGGTCTACCTCTCGCACATGGCCATACACTACAAGAAAGGCGACAGCGTCATCAACACCATCGTAGGCGACGCCATGCCCAGCAACGCCGACAGAAGCGTTTTCGACGGCACACACACTTGCCACCTCTGCGGCAAGATCTGCGATTCAGAAAACTCCCTCAAATGTCATCTCTCATGGCACACCTCCAAAACTTTCCTGTATGGCGCCCGCCACGAGTGCACCATCTGCAAAGTGAAGTTCACTAACAAACGAAGACTGGAACTTCACACTCGAGCTCACTACGAAGACGATAACGGTCCCTACAAGTGCACCATTTGCGGCAAAGGTTACACCGATGAAGGCTACTACCAAAGACATGTGAAGGGACACAACTTCGACCATCAGTCCCACAAAAAGAGGATCGATAAAATCAGAAAGGATAAAGTTAAATGTCCAATATGTACGCGGTACTACCCAGACTTGGTGAAGCTGATCCGTCACTTGCGGCGCACGCACCCCGAGAGTAAGATGATCAAGTCCGACCCCGACGCTCCGCCTCCACTCTACTACTCGTGTAAGTTGTGCGCCAAAGTATTTCTAGACGAGCGGAGACTGCAGTCCCACGAGGAAGCTCATTTAAGGAAGCCAGAGTTCTTTAAATGTAAGTTCTGTGGAAAGAAATACATTTCGCTAAAGAACCACCAGGCCCACATAAAGGGACACTTGGCGCAGAAACACTACGACAACCCGCTCAAGTGTCCGCACTGTGACGAGAAGTTCGTGAAGGGCTACGGACTGCACCACCACCTGCGTGATGCGCACAATGTACTCGAGAACTGGATCGCGGAGCGTACGGAGCAGCCGCTAGACGGCCCACTCAAAGACCTGCAGTGCTCCATCTGTATGAAGGTCCTTGCTAGCAAAGGGAACTACGAGCGACATATTGACTACCACAACTCCTTGAGGTGTAACTACTGCTTCGATTACTTCAGCTCTCTCAGGTTCTTAGAAGGACATCTAGCGTTCTCGTGCGAGAAGAAAAAGCTTTTAGGCGATACCGAAGTTTATCCTAAGAAAGTGAAGTGTAACATTTGTTACAAAGCATTCCATGTTCAAGTGAAACTGGACTGCCACTTGCGCACGCAGCACGGCGTCATAGTAGACAGGGAACAGAGAGCAGGCAAGCAAGAAATTGTCTGTGATTATTGCTTTAGAGTTTTCGAAAACGAGTATGCGCTGAGTACTCACAAGATTTACCATCGCACGGTTGGCTACTATGGGTGTATTTACTGCAAAAAGAAGTTTAACACTTTGACTGTGTATCGAAAACACAAGAATCACCATATGGCGCAGCTGAATGTAGATAACCCGACGAAATGCGAACATTGTGACGAGACGTTCGTCGCTTTCAGGGAAATGATATACCACATGAGGGACGTACACGGAGATGACAAGGAATGGTTCACAGAGCCCAAGGAGTCCATCGAGGAGACATGCCCCATCTGCAACAAACAATTCTACAACCTTCACAAGCATTTGACTTACCATGAACAAAACAAGTGCAAGAAATGCAACGAATATTTCTACTCCCGGGCGGACTTCGATAGTCATCTCTGCGCTATTGAAAGCGATGACGAAGGCACGGCATACGTGGGCAACGAGAATGGTTTCCAGTACGAAGAGTGCAGGTTCTGCTTCAAACCTATCACCAAGAAGAGCACCAAGCGGCTACACAACCAGATACACAAGGGCTCCGGCTCTATATCCTGTAGGTTCTGCTCACTTAAATTTAAAActatggacgcttttaacatCCACGCATTTTCTCATCGAAGTAGAAAATACAACAAGAAGCCGATAAAATGTCGGAAATGCGGCGAAAAGTTCGTTAAATATGGACCATTTATAAAACATATGAAGTTAGTTCACAAATCTACAAAGAAGATTCACTACAGAGCGGTTGTGAAGCCTGAGAAATGTGTCGTTTGTGGAGACGACTTCCCGAATCTTCACAATCATTACCGCGCTCATCTGCTGAACCAGTGTCAAAGTTGTCTGAAATACTTTACTTCCTACAAAGCGATATCTGCGCACAAGTGCGACAAAGAGGACTCGGACCCGTCGAAAGTGTTCACAAGTGACGCTAACTTGAACGAGCTGATAAACACATATGTTCCTAAGGACGAGAAGGATGATGAGAAGTACTACGGCCATACGGACGACGAGGAAGACGATCTTGAGCCACAGTTACTTTGCGAAGAAGAAGAAAGTCAGGAGAGTAAAGACATACCGATGTTGCAGTCGCCGATCATATCAGATGTTCTGTCGCTGTTCAAGACGGAGAATGGGATGGGTGAGGTGGATAGAGTGGTGGATAACATGGATGAAGTGGTCAATAtaacagatgatgatgactcgGTGGATGTCGACGATTCCGTCATGCCAGTAGTTGTCGTTATTGATGACGATTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTIDNALQLAEMAMECARVKIYDGDGLPDKVCSECIQKLSSAHIFKQQCERADQELRRNYVPPPGFSISPPPANRQSSDSAFSNHTDTSNLTKPSSSIEEKVTPATRTRKRSADSVDNASTGGASSDYRPSGSKRVEELRRTHKRPRRLSGHISQLDSDYEDNCASYLPDTDSDEPLLKNSFNCDQCHKHFQSQRSLAIHKRVHDKKESLGENAVVVIPQKIEDASDVEDKLNCDKCGKSFKLKIMLKRHHEICGKTTSPVKTLQKELLISLEPIDGVKNRNIVCEICSTKFKTIDNLAKHMKVVHAAVLKKENLDKQENGNVTVPCMYCKKQFDDYYVHSAHFNKCPKRDDSLSYECPICKKLVLRKNSYFLHLKNMHFEPRMSLKSSVEPETQQEYHECRMCLKKLPSQELLITHLAAHMSNIDDNDGGADNESRASTIDDTASIQSVHSQSRTPTGQFNCPTCDKEFKYKKALQTHKARCHSEVPVQVKIEPPDKASTSLLSETAFRQTESESSQEEDDNTCDICEKQFSYRRILLHHKRTKHNMSSGHKRAKIYLKDCSVRCLICDLDMKVGAINEHNQTHISKNMKPRNLYTCAECEDTFKSCSALANHIKLIHRLKQKRIEDTVNPSDFCEVVVAKAEPLDCIQSHNDFGEVPGEGKPLVDLSGFTCPICSKKMPTLISLKRHVNWHSNVGNNIEKKHECSVCKESFKFQCHYKIHMREHYRDTNLDPKHLTCAICGRRSKHLRAAQAHMTYHKQTRFQNKDYQCSICERVFQYRKVYLSHMAIHYKKGDSVINTIVGDAMPSNADRSVFDGTHTCHLCGKICDSENSLKCHLSWHTSKTFLYGARHECTICKVKFTNKRRLELHTRAHYEDDNGPYKCTICGKGYTDEGYYQRHVKGHNFDHQSHKKRIDKIRKDKVKCPICTRYYPDLVKLIRHLRRTHPESKMIKSDPDAPPPLYYSCKLCAKVFLDERRLQSHEEAHLRKPEFFKCKFCGKKYISLKNHQAHIKGHLAQKHYDNPLKCPHCDEKFVKGYGLHHHLRDAHNVLENWIAERTEQPLDGPLKDLQCSICMKVLASKGNYERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCEKKKLLGDTEVYPKKVKCNICYKAFHVQVKLDCHLRTQHGVIVDREQRAGKQEIVCDYCFRVFENEYALSTHKIYHRTVGYYGCIYCKKKFNTLTVYRKHKNHHMAQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWFTEPKESIEETCPICNKQFYNLHKHLTYHEQNKCKKCNEYFYSRADFDSHLCAIESDDEGTAYVGNENGFQYEECRFCFKPITKKSTKRLHNQIHKGSGSISCRFCSLKFKTMDAFNIHAFSHRSRKYNKKPIKCRKCGEKFVKYGPFIKHMKLVHKSTKKIHYRAVVKPEKCVVCGDDFPNLHNHYRAHLLNQCQSCLKYFTSYKAISAHKCDKEDSDPSKVFTSDANLNELINTYVPKDEKDDEKYYGHTDDEEDDLEPQLLCEEEESQESKDIPMLQSPIISDVLSLFKTENGMGEVDRVVDNMDEVVNITDDDDSVDVDDSVMPVVVVIDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00785388;
- 90% Identity
- iTF_01230875;
- 80% Identity
- -