Basic Information

Insect: Brachylomia viminalis
Gene Symbol: L
Assembly: GCA_937001565.2
Location: CAKZJP020000564.1:234682-264603[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.3e-06 0.00018 23.3 1.7 1 23 87 109 87 109 0.99

2 13 0.54 76 5.6 5.8 1 23 115 137 115 137 0.97

3 13 7.2e-06 0.001 20.9 4.1 1 23 143 165 143 165 0.99

4 13 2.2e-05 0.0032 19.4 0.1 1 23 171 193 171 193 0.98

5 13 0.00057 0.08 15.0 0.0 2 23 209 231 208 231 0.95

6 13 5.2 7.3e+02 2.5 0.1 9 23 262 277 258 277 0.93

7 13 0.26 37 6.6 0.0 3 23 329 349 328 349 0.97

8 13 0.14 20 7.4 0.0 3 23 363 383 362 383 0.91

9 13 0.00047 0.067 15.2 0.3 1 23 391 414 391 414 0.95

10 13 0.084 12 8.2 0.0 1 23 419 442 419 442 0.92

11 13 0.012 1.7 10.9 0.1 1 23 503 527 503 528 0.94

12 13 0.00017 0.024 16.6 0.1 2 23 586 607 585 607 0.96

13 13 0.05 7 8.9 0.0 1 23 615 637 615 637 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.3e-06	0.00018	23.3	1.7	1	23	87	109	87	109	0.99
2	13	0.54	76	5.6	5.8	1	23	115	137	115	137	0.97
3	13	7.2e-06	0.001	20.9	4.1	1	23	143	165	143	165	0.99
4	13	2.2e-05	0.0032	19.4	0.1	1	23	171	193	171	193	0.98
5	13	0.00057	0.08	15.0	0.0	2	23	209	231	208	231	0.95
6	13	5.2	7.3e+02	2.5	0.1	9	23	262	277	258	277	0.93
7	13	0.26	37	6.6	0.0	3	23	329	349	328	349	0.97
8	13	0.14	20	7.4	0.0	3	23	363	383	362	383	0.91
9	13	0.00047	0.067	15.2	0.3	1	23	391	414	391	414	0.95
10	13	0.084	12	8.2	0.0	1	23	419	442	419	442	0.92
11	13	0.012	1.7	10.9	0.1	1	23	503	527	503	528	0.94
12	13	0.00017	0.024	16.6	0.1	2	23	586	607	585	607	0.96
13	13	0.05	7	8.9	0.0	1	23	615	637	615	637	0.98

Sequence Information

Coding Sequence: ATGATCATGTTATTCAAAGGCAACAGCAGTCGGCTGGAGCACCTCATTGAGAAGATCCAGGCGAACAAAGAAAACCACGACGTCACATCAGAGGATATAAAAGAGGCGCTGGGCAGCGTCGGCAGTACGGCAGGCAGCTCTTGGCCGTCGTCGACGCCAGAGCCGTCGCCGTCGCCGGCGTCTACGCCCACCTCGGCCGACGCCGCCGACGCCGAGGCCGAGCCGCCCTTCACGCTCGGCGTCACCGAGCACACCCCTTACCAGTGCCAGTTCTGCGATAAAGCCTTCCCCAGGCTCTCTTATCTCAAGAAACATGAACAGACCCATTCGGATCAGATGCCGTTCAGGTGTGAGTTCTGCTCGCGCCTGTTCAAGCACAAGCGTTCTCGCGACCGCCACGTCAAGCTGCACACCGGAGACCGCAAATACCGCTGCGCACATTGTGAATCTGCCTTCTCCAGGAGTGACCACTTGAAGATCCACATGAAGACGCACGACAATCAGAAGCCGTTCCAGTGCACCGTGTGCAACCGAGGGTACAACACCGCAGCCGCTCTGACGTCACACATGCAGGGACATAAGAGGGACCGTGAGGGTCGCGAGCCCGACAGGCGCAGGGCACTGCGCTGTCTGCGATGTGGAGACGCCTTCCGACGACCAGACCTCTTGCAGgcCCACATGGCGAGCGCACACGGCGTTGACACAGCCGCTATGACTCCACCGAGACGCGTCGCTTCGCAGCCGCCGCCCACACTACTCGCCTGCATCTACTGCACTCGCGACACCTTCACAAGCATGGAACAGTTGCAACTCCACGTGCGAGCAGCACACTCAGCGCTGCTAAACGGCGAAGGGCCAGTTCAAGTTGATCAGCCTTTGCCCACTGATCTAAGCCGACGGGCACCTGACGAAGCGCCCCCAGTCAAACGTCCTCGCTCCGGTTCTGGCACGCCACATACAACCTTATCACCGAGCACACTTCTCTGCAATCAATGTGATGCTGCGCTCCCAGATTTTGAAGCATTTCGGGCTCATTTGAAAGGGCATATTGAAGAAGGAGGGGAGCTACGATCAAGTCCTGCGCCTTGCGTTCACTGTGGAGCTACGTTTGCGGACGCTGCGGCGTCTGAGCGTCACCTCACAGCACATTACTTGGCAGTCTCGTGCGAGTACACCTGCCACAGTTGCGCTCGAAGCTTCGCTGCTCCTGATGACTTGCAAAAACATCTTCTAGAACTGCACGCGCATCATTTGTATAGATGCGCTCTTTGCAAAGAGATTTTTGATTCAAAAGTTGCAATTCAGGTACACTTCGCGGTAGCTCATAGTGGTGAAAACAAAGTCTGGGTGTGTCGTTCTTGCGGAGCGGGCGCGGGCGCTCTCCGCTCGGAGGCCGAGGGCGCCGCTCACGTGCGCTCTCGACACGCGGCCGCAGCCCCACGATGTGCCTGTGGAGCCCTACTTGGCAGCGGGGTTGCTGCGAGGACACCTCGGCCACACCGCGCATATCGCTGTCCCGTGCCTGCCTGTAATGATGCATTTGCTGTGCAGTACTTGCTCGAAAGACACATGCAGGCTCATCATGCAATGCAACAGCAGGTTCTAAACGGAGAATTACCAAGAACAAAACGAATGGACTCCACCAACGGGGGCGAGGGAGGTGATGACGCACGATCTCCGTGTACCCCGGGAGCAGACGGCGCGGGGGCGGCGGGCGGCGAGGACCGGCGCCGCAAGAACGGCGCCGTCGCCTTGCAGTGCGCCTACTGCGGGGAGCGCACGCGCAGCAGGGCGGAGCTAGAGGCTCACACTCGCGCTCACTCGGGGGCCGCGGCCGCGAGACACAAGTGTCTCATCTGTGATGAGGTGCTGCCGTCTGCTGCAGTGTTGGCGGAACATAAACTCACACATTGCAAGACGCGGTGGCCCTTCAAAGTCGACTCTCCAACGTTTGGTGACCAAATTCGAGACGACTGGTTCGGTAAACAACCAACCAACACCCTTACGTCAAAGGAACGCCAGATCGGCCGAGAACATCGCTGCTGTCCGTGA
Protein Sequence: MIMLFKGNSSRLEHLIEKIQANKENHDVTSEDIKEALGSVGSTAGSSWPSSTPEPSPSPASTPTSADAADAEAEPPFTLGVTEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRALRCLRCGDAFRRPDLLQAHMASAHGVDTAAMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGEGPVQVDQPLPTDLSRRAPDEAPPVKRPRSGSGTPHTTLSPSTLLCNQCDAALPDFEAFRAHLKGHIEEGGELRSSPAPCVHCGATFADAAASERHLTAHYLAVSCEYTCHSCARSFAAPDDLQKHLLELHAHHLYRCALCKEIFDSKVAIQVHFAVAHSGENKVWVCRSCGAGAGALRSEAEGAAHVRSRHAAAAPRCACGALLGSGVAARTPRPHRAYRCPVPACNDAFAVQYLLERHMQAHHAMQQQVLNGELPRTKRMDSTNGGEGGDDARSPCTPGADGAGAAGGEDRRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKTRWPFKVDSPTFGDQIRDDWFGKQPTNTLTSKERQIGREHRCCP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00667807;
90% Identity: iTF_00667807;
80% Identity: -