Bvim037040.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000465.1:508618-519186[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.5 71 5.7 4.5 1 23 24 46 17 46 0.97 2 26 1.6 2.2e+02 4.2 0.1 2 23 54 75 53 75 0.95 3 26 0.17 25 7.2 0.2 1 14 81 94 81 97 0.85 4 26 0.17 25 7.2 0.2 1 14 127 140 127 143 0.85 5 26 0.17 25 7.2 0.2 1 14 173 186 173 189 0.85 6 26 0.17 25 7.2 0.2 1 14 219 232 219 235 0.85 7 26 0.17 25 7.2 0.2 1 14 265 278 265 281 0.85 8 26 0.17 25 7.2 0.2 1 14 311 324 311 327 0.85 9 26 0.17 25 7.2 0.2 1 14 357 370 357 373 0.85 10 26 0.17 25 7.2 0.2 1 14 403 416 403 419 0.85 11 26 0.17 25 7.2 0.2 1 14 449 462 449 465 0.85 12 26 0.17 25 7.2 0.2 1 14 495 508 495 511 0.85 13 26 0.17 25 7.2 0.2 1 14 541 554 541 557 0.85 14 26 0.17 25 7.2 0.2 1 14 587 600 587 603 0.85 15 26 0.17 25 7.2 0.2 1 14 633 646 633 649 0.85 16 26 0.17 25 7.2 0.2 1 14 679 692 679 695 0.85 17 26 0.17 25 7.2 0.2 1 14 725 738 725 741 0.85 18 26 0.17 25 7.2 0.2 1 14 771 784 771 787 0.85 19 26 0.17 25 7.2 0.2 1 14 817 830 817 833 0.85 20 26 0.0018 0.25 13.4 2.3 1 23 863 885 863 885 0.96 21 26 0.0047 0.67 12.1 3.0 1 23 891 913 891 913 0.98 22 26 0.39 55 6.1 7.2 1 23 922 944 922 944 0.98 23 26 6.4e-05 0.0091 18.0 0.5 2 23 1000 1021 1000 1021 0.97 24 26 0.0016 0.22 13.6 2.7 1 23 1038 1060 1038 1060 0.96 25 26 2.3e-06 0.00033 22.5 0.7 1 23 1066 1088 1066 1088 0.98 26 26 7.9e-07 0.00011 24.0 3.1 1 23 1094 1117 1094 1117 0.98
Sequence Information
- Coding Sequence
- ATGAAATCGAAGTCGTCAAAGCTGAAGAGTGGCGATGAGAAGCCGCGCCGCAAGCACCAGAAGAGGCCGCACGCCTGCGAGTACTGCAACCAGAAGTTCCTCCACCTGAACATGCTGGAGGTGCACCGGCGCGCGCACGCGGGCGAGGCGCTGGTGCTGCGCTGTCACTACTGCCTGcagcccgcgcccgcgcgcgaCGAGCTGCGCGAGCACGAGGCCACGCACCTGGGCGCGCGGCCCTACCTGTGCACCGTGTGCGGGAAGACGTACAAGAAGAGGGAGACTATGGTGAGTCCGCGTCACGACTACTGCCTGcagcccgcgcccgcgcgcgaCGAGCTGCGCGAGCACGAGGCCACGCACCTGGGCGCGCGGCCCTACCTGTGCACCGTGTGCGGGAAGACGTACAAGAAGAGGGAGACTATGGTGAGTCCGCGTCACGACTACTGCCTGcagcccgcgcccgcgcgcgaCGAGCTGCGCGAGCACGAGGCCACGCACCTGGGCGCGCGGCCCTACCTGTGCACCGTGTGCGGGAAGACGTACAAGAAGAGGGAGACTATGGTGAGTCCGCGTCACGACTACTGCCTGcagcccgcgcccgcgcgcgaCGAGCTGCGCGAGCACGAGGCCACGCACCTGGGCGCGCGGCCCTACCTGTGCACCGTGTGCGGGAAGACGTACAAGAAGAGGGAGACTATGGTGAGTCCGCGTCACGACTACTGCCTGcagcccgcgcccgcgcgcgaCGAGCTGCGCGAGCACGAGGCCACGCACCTGGGCGCGCGGCCCTACCTGTGCACCGTGTGCGGGAAGACGTACAAGAAGAGGGAGACTATGGTGAGTCCGCGTCACGACTACTGCCTGcagcccgcgcccgcgcgcgaCGAGCTGCGCGAGCACGAGGCCACGCACCTGGGCGCGCGGCCCTACCTGTGCACCGTGTGCGGGAAGACGTACAAGAAGAGGGAGACTATGGTGAGTCCGCGTCACGACTACTGCCTGcagcccgcgcccgcgcgcgaCGAGCTGCGCGAGCACGAGGCCACGCACCTGGGCGCGCGGCCCTACCTGTGCACCGTGTGCGGGAAGACGTACAAGAAGAGGGAGACTATGGTGAGTCCGCGTCACGACTACTGCCTGcagcccgcgcccgcgcgcgaCGAGCTGCGCGAGCACGAGGCCACGCACCTGGGCGCGCGGCCCTACCTGTGCACCGTGTGCGGGAAAACTTACAAGAAGAGGGAGACTATGGTGAGTCCGCGTCACGACTACTGCCTGcagcccgcgcccgcgcgcgaCGAGCTGCGCGAGCACGAGGCCACGCACCTGGGCGCGCGGCCCTACCTGTGCACCGTGTGCGGGAAGACGTACAAGAAGAGGGAGACTATGGTGAGTCCGCGTCACGACTACTGCCTGcagcccgcgcccgcgcgcgaCGAGCTGCGCGAGCACGAGGCCACGCACCTGGGCGCGCGGCCCTACCTGTGCACCGTGTGCGGGAAGACGTACAAGAAGAGGGAGACTATGGTGAGTCCGCGTCACGACTACTGCCTGcagcccgcgcccgcgcgcgaCGAGCTGCGCGAGCACGAGGCCACGCACCTGGGCGCGCGGCCCTACCTGTGCACCGTGTGCGGGAAGACGTACAAGAAGAGGGAGACTATGGTGAGTCCGCGTCACGACTACTGCCTGcagcccgcgcccgcgcgcgaCGAGCTGCGCGAGCACGAGGCCACGCACCTGGGCGCGCGGCCCTACCTGTGCACCGTGTGCGGGAAGACGTACAAGAAGAGGGAGACTATGGTGAGTCCGCGTCACGACTACTGCCTGcagcccgcgcccgcgcgcgaCGAGCTGCGCGAGCACGAGGCCACGCACCTGGGCGCGCGGCCCTACCTGTGCACCGTGTGCGGGAAGACGTACAAGAAGAGGGAGACTATGGTGAGTCCGCGTCACGACTACTGCCTGcagcccgcgcccgcgcgcgaCGAGCTGCGCGAGCACGAGGCCACGCACCTGGGCGCGCGGCCCTACCTGTGCACCGTGTGCGGGAAGACGTACAAGAAGAGGGAGACTATGGTGAGTCCGCGTCACGACTACTGCCTGcagcccgcgcccgcgcgcgaCGAGCTGCGCGAGCACGAGGCCACGCACCTGGGCGCGCGGCCCTACCTGTGCACCGTGTGCGGGAAGACGTACAAGAAGAGGGAGACTATGGTGAGTCCGCGTCACGACTACTGCCTGcagcccgcgcccgcgcgcgaCGAGCTGCGCGAGCACGAGGCCACGCACCTGGGCGCGCGGCCCTACCTGTGCACCGTGTGCGGGAAGACGTACAAGAAGAGGGAGACTATGGTGAGTCCGCGTCACGACTACTGCCTGcagcccgcgcccgcgcgcgaCGAGCTGCGCGAGCACGAGGCCACGCACCTGGGCGCGCGGCCCTACCTGTGCACCGTGTGCGGGAAGACGTACAAGAAGAGGGAGACTATGGTGAGTCCGCGTCACGACTACTGCCTGcagcccgcgcccgcgcgcgaCGAGCTGCGCGAGCACGAGGCCACGCACCTGGGCGCGCGGCCCTACCTGTGCACCGTGTGCGGGAAGACGTACAAGAAGAGGGAGACTATGGTGTACCACCGGAAGCGCCACGCGCCGGACAAGGAGTTCGTGTGCGACGTGTGCTCCAAGCGCTTCCCCGCCGCCTGCAAGCTGCACAAGCACCTCCTCACGCACCGCCGCGACGCCTTCGTGCTGCGCTACGAGTGTCCCGTCTGCGCACACATGTTCCACACGCGCTACCACGTGCACATGCACCTCAGCACGCACCAGAAGGAGGGCCTGATCTTAGAAGAGAATCGCAGCGAGATCTTGGCTATGGTTCTACAGAACGCGCGCAAGATCCCGCGCGCGGGCTGCACGCTAGCGCCCGCCGCGGCCGCGCACGAGCcgcctgcgcacgcgcacgcgccgccgcccgACGAGCGCTCGCGCGTGTGCAACATCTGCGGGGCCGTGTTCTCGCACTTCTACTACCTCGAGGAGCACCTCAAGAGCCACGGCGAGCGCATCGCCGTCGCCGACCTCGACAAGCCAGAAGATAAGAAATACATCTGTCCGATCTGTAATAAAGGCTTCAAGCTACACTACTACCTCAAACTCCACAGCTTCACGCATTCGAAGGAGAAGCCCTTCATCTGCCAACAGTGCGGGAAAGGGTTCATCACGAAAGGTAAACTGAAAAGACATTTGGAGACCCACACGGGCCTGAAGAAGTATCAGTGTCATATCTGCTACAAGTTCTTCACGCGGCCCAGCTACCTGCGCATACACGTGCGCACGATACACGGCACGCAGGACTATAACTTCAGGTTCGACAAGCGGTACGGACTCGGCTCGCTCGCTGTGTCGGCCATGACGATGTCGGATGTCAGTCAAAATAGTATataa
- Protein Sequence
- MKSKSSKLKSGDEKPRRKHQKRPHACEYCNQKFLHLNMLEVHRRAHAGEALVLRCHYCLQPAPARDELREHEATHLGARPYLCTVCGKTYKKRETMVSPRHDYCLQPAPARDELREHEATHLGARPYLCTVCGKTYKKRETMVSPRHDYCLQPAPARDELREHEATHLGARPYLCTVCGKTYKKRETMVSPRHDYCLQPAPARDELREHEATHLGARPYLCTVCGKTYKKRETMVSPRHDYCLQPAPARDELREHEATHLGARPYLCTVCGKTYKKRETMVSPRHDYCLQPAPARDELREHEATHLGARPYLCTVCGKTYKKRETMVSPRHDYCLQPAPARDELREHEATHLGARPYLCTVCGKTYKKRETMVSPRHDYCLQPAPARDELREHEATHLGARPYLCTVCGKTYKKRETMVSPRHDYCLQPAPARDELREHEATHLGARPYLCTVCGKTYKKRETMVSPRHDYCLQPAPARDELREHEATHLGARPYLCTVCGKTYKKRETMVSPRHDYCLQPAPARDELREHEATHLGARPYLCTVCGKTYKKRETMVSPRHDYCLQPAPARDELREHEATHLGARPYLCTVCGKTYKKRETMVSPRHDYCLQPAPARDELREHEATHLGARPYLCTVCGKTYKKRETMVSPRHDYCLQPAPARDELREHEATHLGARPYLCTVCGKTYKKRETMVSPRHDYCLQPAPARDELREHEATHLGARPYLCTVCGKTYKKRETMVSPRHDYCLQPAPARDELREHEATHLGARPYLCTVCGKTYKKRETMVSPRHDYCLQPAPARDELREHEATHLGARPYLCTVCGKTYKKRETMVSPRHDYCLQPAPARDELREHEATHLGARPYLCTVCGKTYKKRETMVYHRKRHAPDKEFVCDVCSKRFPAACKLHKHLLTHRRDAFVLRYECPVCAHMFHTRYHVHMHLSTHQKEGLILEENRSEILAMVLQNARKIPRAGCTLAPAAAAHEPPAHAHAPPPDERSRVCNICGAVFSHFYYLEEHLKSHGERIAVADLDKPEDKKYICPICNKGFKLHYYLKLHSFTHSKEKPFICQQCGKGFITKGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRFDKRYGLGSLAVSAMTMSDVSQNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00238375;
- 90% Identity
- iTF_00238375;
- 80% Identity
- iTF_00238375;