Bvim044712.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000669.1:833775-835223[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0055 0.78 11.9 0.7 2 23 160 181 159 181 0.97 2 11 4.5e-05 0.0063 18.5 1.7 1 23 187 209 187 210 0.95 3 11 4.2e-05 0.006 18.5 0.3 1 23 217 239 217 239 0.98 4 11 9.8e-06 0.0014 20.5 0.9 1 23 245 267 245 267 0.98 5 11 6.1e-06 0.00087 21.2 3.5 1 23 273 295 273 295 0.98 6 11 2.4e-06 0.00034 22.5 1.9 1 23 301 323 301 323 0.98 7 11 2.8e-06 0.00039 22.3 0.1 3 23 331 352 329 352 0.96 8 11 0.022 3.1 10.0 0.3 2 23 358 376 357 376 0.84 9 11 0.001 0.14 14.2 0.6 1 20 382 401 382 405 0.90 10 11 0.011 1.6 10.9 0.3 1 23 411 436 411 436 0.94 11 11 7e-05 0.0099 17.8 4.8 1 23 442 465 442 465 0.97
Sequence Information
- Coding Sequence
- ATGGAGTCGAAAGTATGTCGTATTTGTCTCAAGAAAACAGCTACAATGTCCATATTTGATAGAGAAGACGAAATTCAATTGAGTACCAAGGTGATGCGCTGCGTCAATGTGGTGGTGGTCGAGGGAGACGGACTGCCTGACAACATATGCAATAACTGTGCTGCGGAACTGTCGGCATCATACGAGTTCGTGAACAAATGCGAGGCATCTGACAAGGCCCTGCGCTGTGCTAACATTGTAAACCTTTATGAGGAGTTAGTGCCTAAAACTGAACCCCAAATAAAGTTAGAAAATATCAAGGCGGAAAGCGGCACTGATGACCAAGATCACTTTGATAATTTCTTATTAGATGACCCCACAGACTGCAGTGATAACTACAACGtcaagaaagtaaaaaaaagaaagtataTAAGGTCTGGCAAATACAAACAACTACAAATCGATGGACGGAAGTTAAGGCCGAAAATAGGACCAGTGAGGTGCAAGGTATGTGGGCAAATGGCATCATGTCGCTCTGCCCTGGAGGGTCACATGAGGACTCACACTGGGGAGAAACCATTCGCGTGTGACTCCTGTGGGGCACGGTTCAACCTAAAAGGGACACTCAAAAGACACATTAAGACACACCATACGCAGAGAGAAAGGAAATTCATTTGTGAAACCTGTGGCAGCAGCTTTTACTCGAAGAGTGACATTATAACACACATTAGAGTTCATACTGATGAAAGGCCATATTCTTGCTCTTTTTGCGGTAAAGCATTCCGGCAGATTGCTTCAATGATACGTCATAAACGCATGCATACAGGTGAAAAACCATACACTTGTTCCATCTGTTTTAAGAAGTTCATAGACAAGAGCCACATGAAGAGACACCAGGCCGTCCACTCTGATGAGAAGAACTTCACTTGTCACCTGTGCAATAAAtctgttaaaacaagaaatgcTCTCAAGGCTCATATTCGGATACACTCTAATGAAAAGCACATCATTTGTAGTTACTGTGGACTGGCATTCTCTTTTAAGGGTAACCTACAAGTCCATATAAAAAGGATACATTCAGAGAGATCTGGCCAATGCAGTGTGTGTTTAAAGACATTTCCAGATTTAGAGGCACACATGCGTAAACACACTGGAGAGAAACCATTTGCATGCAAGCTTTGTGATCAGGCATTTGCAAGCAAAAGGAGTTTGTCAAACCATGTTGGATTCAAACATGAGAATGTTTCCAAGTACAAGTGTTCCATAGGAGAATGTACCAAGACATTCCCAACTGCGATGATGCTGGAGTTCCACCTTCTGAAGCAGCACACTAATCACACGCCGTACATTTGTCACCACTGTTCCAGAGGGTTCTTCAGGACGAGTGATCTGTCCCGACATCTCAGAGTCAGTCATATGGAAACTGCTACTACCATTGAACCTCGAATATTGAGGCCAATGATATCCTGA
- Protein Sequence
- MESKVCRICLKKTATMSIFDREDEIQLSTKVMRCVNVVVVEGDGLPDNICNNCAAELSASYEFVNKCEASDKALRCANIVNLYEELVPKTEPQIKLENIKAESGTDDQDHFDNFLLDDPTDCSDNYNVKKVKKRKYIRSGKYKQLQIDGRKLRPKIGPVRCKVCGQMASCRSALEGHMRTHTGEKPFACDSCGARFNLKGTLKRHIKTHHTQRERKFICETCGSSFYSKSDIITHIRVHTDERPYSCSFCGKAFRQIASMIRHKRMHTGEKPYTCSICFKKFIDKSHMKRHQAVHSDEKNFTCHLCNKSVKTRNALKAHIRIHSNEKHIICSYCGLAFSFKGNLQVHIKRIHSERSGQCSVCLKTFPDLEAHMRKHTGEKPFACKLCDQAFASKRSLSNHVGFKHENVSKYKCSIGECTKTFPTAMMLEFHLLKQHTNHTPYICHHCSRGFFRTSDLSRHLRVSHMETATTIEPRILRPMIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041110;
- 90% Identity
- iTF_00173462;
- 80% Identity
- -