Basic Information

Insect: Brachylomia viminalis
Gene Symbol: -
Assembly: GCA_937001565.2
Location: CAKZJP020000528.1:621155-628579[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.21 30 6.9 1.4 1 23 28 50 28 50 0.90

2 25 0.047 6.6 9.0 0.2 2 23 78 100 77 100 0.93

3 25 6.3e-05 0.0089 18.0 4.5 2 23 124 145 123 145 0.97

4 25 0.05 7.1 8.9 0.3 2 23 149 170 148 170 0.96

5 25 0.018 2.5 10.3 4.0 1 23 175 198 175 198 0.95

6 25 3.7 5.3e+02 3.0 2.8 2 23 210 232 209 232 0.90

7 25 0.38 54 6.1 0.2 1 23 238 261 238 261 0.95

8 25 5.7e-07 8.2e-05 24.4 2.1 2 23 266 287 265 287 0.97

9 25 0.00047 0.066 15.2 2.3 1 23 293 315 293 315 0.97

10 25 0.00088 0.12 14.4 2.6 1 23 321 344 321 344 0.97

11 25 0.89 1.3e+02 4.9 2.7 1 23 401 423 401 423 0.98

12 25 0.0015 0.21 13.7 0.4 2 23 451 473 450 473 0.94

13 25 9.3e-05 0.013 17.5 1.6 1 23 496 518 496 518 0.97

14 25 0.18 26 7.1 0.5 2 23 523 544 523 544 0.95

15 25 4.3e-06 0.00061 21.7 4.4 1 23 549 572 549 572 0.97

16 25 2.1 2.9e+02 3.8 0.3 2 11 582 591 581 594 0.89

17 25 0.26 37 6.6 0.4 2 23 685 707 684 707 0.95

18 25 0.4 56 6.0 6.4 1 23 730 752 730 752 0.97

19 25 1.3 1.9e+02 4.4 0.5 2 23 757 778 756 778 0.95

20 25 0.013 1.9 10.7 1.4 1 23 783 806 783 806 0.94

21 25 0.048 6.8 8.9 2.5 2 23 816 838 815 838 0.96

22 25 0.029 4.1 9.6 3.8 1 23 844 867 844 867 0.96

23 25 6.4e-05 0.009 18.0 2.2 1 23 871 893 871 893 0.98

24 25 4.9e-05 0.007 18.3 3.6 1 23 899 921 899 921 0.99

25 25 0.029 4.1 9.6 0.2 1 23 929 952 929 952 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.21	30	6.9	1.4	1	23	28	50	28	50	0.90
2	25	0.047	6.6	9.0	0.2	2	23	78	100	77	100	0.93
3	25	6.3e-05	0.0089	18.0	4.5	2	23	124	145	123	145	0.97
4	25	0.05	7.1	8.9	0.3	2	23	149	170	148	170	0.96
5	25	0.018	2.5	10.3	4.0	1	23	175	198	175	198	0.95
6	25	3.7	5.3e+02	3.0	2.8	2	23	210	232	209	232	0.90
7	25	0.38	54	6.1	0.2	1	23	238	261	238	261	0.95
8	25	5.7e-07	8.2e-05	24.4	2.1	2	23	266	287	265	287	0.97
9	25	0.00047	0.066	15.2	2.3	1	23	293	315	293	315	0.97
10	25	0.00088	0.12	14.4	2.6	1	23	321	344	321	344	0.97
11	25	0.89	1.3e+02	4.9	2.7	1	23	401	423	401	423	0.98
12	25	0.0015	0.21	13.7	0.4	2	23	451	473	450	473	0.94
13	25	9.3e-05	0.013	17.5	1.6	1	23	496	518	496	518	0.97
14	25	0.18	26	7.1	0.5	2	23	523	544	523	544	0.95
15	25	4.3e-06	0.00061	21.7	4.4	1	23	549	572	549	572	0.97
16	25	2.1	2.9e+02	3.8	0.3	2	11	582	591	581	594	0.89
17	25	0.26	37	6.6	0.4	2	23	685	707	684	707	0.95
18	25	0.4	56	6.0	6.4	1	23	730	752	730	752	0.97
19	25	1.3	1.9e+02	4.4	0.5	2	23	757	778	756	778	0.95
20	25	0.013	1.9	10.7	1.4	1	23	783	806	783	806	0.94
21	25	0.048	6.8	8.9	2.5	2	23	816	838	815	838	0.96
22	25	0.029	4.1	9.6	3.8	1	23	844	867	844	867	0.96
23	25	6.4e-05	0.009	18.0	2.2	1	23	871	893	871	893	0.98
24	25	4.9e-05	0.007	18.3	3.6	1	23	899	921	899	921	0.99
25	25	0.029	4.1	9.6	0.2	1	23	929	952	929	952	0.96

Sequence Information

Coding Sequence: ATGACTATATCAGAGAGACAAAATGCAGCTACGTTCTTAGAATATACCACCATCAAGCCTTTCTTTTACCAACAAGCGAATTTCAAATGCTTCTACTGCAATGAAGTTTTCCCAGAAATACATTCCGTCTTACAACACACCGCTTTCCACGTAACTCCAGAAAGATGTTGTTTACTAAAGCAGTATCTAAGAAAAGGGAAGAGAGTCATCAAAGTAGATATATCAGGTCTCAAATGCAGGATATGCGAACAAAAGTATTCCGATATTGATGATATTAGAAAGCATTTAACTCTAGCACATAAGAAAGAGTTCAATTCGGCGGGGAATGGATTGATGGCGTATGATTTAAATACGAATAACGGTCAACTGACTTGCCATAAGTGTTCAAAAACTTTCAACTCTTTCTTCCTTCTAAACAGACATATGAATGTACATTTCAGCGTAGTTTGTGAGACCTGTGGCTTAGGGTTTATGTCGCACCAGCGCTTAATAAACCACCGAATAGTACATCAAACAGGAGTCCATAGATGCGACAAATGTCAGGAAGTATTTCCTACTAAATTAAAACTACGTTACCATTTATTCAAGAAACACGAAGTAACGAACGCGAAGAAGATAAAACCATTAAAATGTCCGCATTGTTTAGAAAGATTCGCGGAACATTATAGAAAGATGACTCATTTAAAAGAAGTTCACGGGATTTCGTTCACGTTTGAATGCAGTGCTTGTAAGGCAGTCTTGCCAACCCGTAGAGCTTTAACAGAACACACAACAAAACTGCACACGCAAAAAATACAATGCAAAGTTTGTGGAAAGTGTTTCGGAACTAAATCTTTGCTAAAAATGCATATGAGAGGACACACCGGAGAGAGAAACTTCTTCTGCGTGATTTGCCAGAAGGCATACATGCATGAAAGGACTTTAAGACAGCATATGAGGGTACATGGTCCTGTCTGGAAGTTCACGTGCTCGGAATGCGGAAGCGGGTTCCATAATAGAAATGATTATAATAAGCACATGAAGCAGTGGCATCCACAGTGGCAGTTTAAGACTATCGTTAAGAATTTTGGAAGAACCGAAGCGAAGCGACGACAAGGAGCACTGACCAGTATCTGGGAACTCACACTTTCTGAACGACAGAACGCCTCGATGCTTCTAGAAAACACCACAGCAACACCTTTCGTGTACTGCAGATACTATTTCAAATGCTTCTTCTGCAGAGAACAGTATTCAGAGATAAAAACACTCTTACAACACACGCTGAAACATGAGACACCAGAAAATGCTATCATCCTCAAAGAATACCTCCCGAAGGGTAAACGGACTGTTAAAGTAGACATTTCAGAGTTAAAATGCAGAATTTGTGGTCAAAGTTACAAGGACCTCGATGAAACACGAAAGCATTTGACTATAGAACATAAAATGTCGTTCACTGAATCAGGAAACGGATTGGTAGCTTACGATCTGTCTTCTAAAAATGGCCAATTTGCCTGCCACATATGCAGCAAGATCTTCCAGACATTTATACTCCTAAACAGGCATATGAATGTACATTTTAGTAATGCGGTATGCGAAACTTGCGGAGCTGGTTTTATGACTCATCAGCGGTTGATACAGCACAAAGAAATCCACCTACCAGGAGGGTACCCTTGCCATAAATGTCACAAAGTATACACAACAAATTCTAACTTAAAATATCACATAGAAAAGGCTCACGAAGGGACGACGAAGATGAGAATGTTAAGATGTCCACAATGTCCCGAAAGATTCACAGAACATTTTCgcgacAAGCCGGTGGTGCTCGAAACAAGTATATGGCAGTTAACGGTTCCAGAAAGAAAAAATGCATCTATGTTTATTGAATGTACGACAGTTAGACCGTTTATATTTAGGGGATCAAGCTTCAAATGTTTCTTCTGCACGGAACACCATTCAGAACCAGCAGCCTTATTAGAACATACTACAACgcacaaaatagaaaatagagaAGTAATCTTCGAAAAATATGTAGCCAAAGGCAAAAGATGCTTACAAGTAGATATTTCGAAACTAAAATGTCGGTTATGTGACGAAAATTATCCCGATCTTAACACGATTAGAGAACATCTTAAAAACAGGCATGGTAAACATTTCTTTTTGTCTAGCAACGGCATGACAGAATATAAGTTGGAGCTTATAAATAATAAGTTCGTTTGTCACATCTGTAACGAAGATTTTCATAACTTTAACTTATTAAACTGTCATATGAACAGTCACGTTGGCAAAGTAGTATGTGAAAACTGTGGAGATGGTTTCTTATACCAACATCTGCTCATGAAACATAAAGAGTCTCATTTGACAAAGCCTTTCACTTGTAAACTATGCGCAAAAAGTTTCTTGAAGAAAAGTCAATTGACATACCACACAGATATAGTGCATAAGGGAAAAGAACGAGTGAATATGAAAAAATGTCCCAAATGTCCACAAACCTTTAAAGAACATTACGCCAAATTACTGCATTTGAAGAAAGTCCATGGAATTGCAAAGACTTTTCGTTGCCATGTCTGTAAAAATACTTTCTCGACCCGAAGAGCGGCAACCGAACATCTCACAAAATTTCACACGGAGAAATACAAATGCGAAGTGTGCTCTAAATGCTTTGGTGTAGAGTCGAGATTAAAACAGCACATGCGCGGACATACAGGAGAAAGAAATTTCACTTGTCCCATATGTAAAAATGCTTACATGCATAAAAGGACTCTAAATAAACACATGAGGACTCATGAAACTTTAacagtttttaaatataattgcatGGACTGTGGCGCAGGGTTCCAAGTAAAAAATGATTATGATAAACATATTAAACAGTGGCATCCTTCTTATGGTGATATTGTGCAGTGA
Protein Sequence: MTISERQNAATFLEYTTIKPFFYQQANFKCFYCNEVFPEIHSVLQHTAFHVTPERCCLLKQYLRKGKRVIKVDISGLKCRICEQKYSDIDDIRKHLTLAHKKEFNSAGNGLMAYDLNTNNGQLTCHKCSKTFNSFFLLNRHMNVHFSVVCETCGLGFMSHQRLINHRIVHQTGVHRCDKCQEVFPTKLKLRYHLFKKHEVTNAKKIKPLKCPHCLERFAEHYRKMTHLKEVHGISFTFECSACKAVLPTRRALTEHTTKLHTQKIQCKVCGKCFGTKSLLKMHMRGHTGERNFFCVICQKAYMHERTLRQHMRVHGPVWKFTCSECGSGFHNRNDYNKHMKQWHPQWQFKTIVKNFGRTEAKRRQGALTSIWELTLSERQNASMLLENTTATPFVYCRYYFKCFFCREQYSEIKTLLQHTLKHETPENAIILKEYLPKGKRTVKVDISELKCRICGQSYKDLDETRKHLTIEHKMSFTESGNGLVAYDLSSKNGQFACHICSKIFQTFILLNRHMNVHFSNAVCETCGAGFMTHQRLIQHKEIHLPGGYPCHKCHKVYTTNSNLKYHIEKAHEGTTKMRMLRCPQCPERFTEHFRDKPVVLETSIWQLTVPERKNASMFIECTTVRPFIFRGSSFKCFFCTEHHSEPAALLEHTTTHKIENREVIFEKYVAKGKRCLQVDISKLKCRLCDENYPDLNTIREHLKNRHGKHFFLSSNGMTEYKLELINNKFVCHICNEDFHNFNLLNCHMNSHVGKVVCENCGDGFLYQHLLMKHKESHLTKPFTCKLCAKSFLKKSQLTYHTDIVHKGKERVNMKKCPKCPQTFKEHYAKLLHLKKVHGIAKTFRCHVCKNTFSTRRAATEHLTKFHTEKYKCEVCSKCFGVESRLKQHMRGHTGERNFTCPICKNAYMHKRTLNKHMRTHETLTVFKYNCMDCGAGFQVKNDYDKHIKQWHPSYGDIVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -