Bvim045836.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000717.1:447286-482754[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.72 1e+02 5.2 0.3 1 23 498 520 498 520 0.95 2 19 0.0042 0.6 12.2 1.7 1 23 532 554 532 554 0.96 3 19 0.00081 0.12 14.5 0.9 1 23 560 582 560 582 0.98 4 19 0.056 7.9 8.7 1.4 5 23 590 608 589 608 0.93 5 19 0.00081 0.12 14.5 0.9 1 23 614 636 614 636 0.98 6 19 0.056 7.9 8.7 1.4 5 23 705 723 704 723 0.93 7 19 0.00081 0.12 14.5 0.9 1 23 729 751 729 751 0.98 8 19 0.056 7.9 8.7 1.4 5 23 759 777 758 777 0.93 9 19 0.00081 0.12 14.5 0.9 1 23 783 805 783 805 0.98 10 19 0.056 7.9 8.7 1.4 5 23 874 892 873 892 0.93 11 19 0.00081 0.12 14.5 0.9 1 23 898 920 898 920 0.98 12 19 0.056 7.9 8.7 1.4 5 23 989 1007 988 1007 0.93 13 19 0.00081 0.12 14.5 0.9 1 23 1013 1035 1013 1035 0.98 14 19 1.9e-05 0.0026 19.7 2.4 1 23 1042 1064 1042 1064 0.99 15 19 3.6e-06 0.00051 21.9 0.4 1 23 1070 1092 1070 1092 0.93 16 19 1.2e-07 1.7e-05 26.6 0.1 1 23 1098 1120 1098 1120 0.98 17 19 3.6e-05 0.0051 18.8 2.7 1 23 1126 1149 1126 1149 0.96 18 19 0.0002 0.028 16.4 2.7 1 23 1155 1178 1155 1178 0.96 19 19 6.9e-05 0.0097 17.9 3.3 2 23 1185 1206 1184 1206 0.97
Sequence Information
- Coding Sequence
- ATGAACCAGTGTTGCTTTATCTGCAACAACAGAGCCGGCCTCTCTCTTAGAAATGCTTCGAGCCTGTTTGGAGAACATAACACATTACAGTCTGGCAAGAAAGTATCGGAAGTTGTGAGTGAGATCGTGGGCAAACCAGTGCTAGAGAACAAAGTCCATACCAATATACTGTGTAAGAAATGCTTTAAGACATGCTCGGAGTATGATAGCATTCAAGTCAGattacaaacaataaaaacggATTTACTAGGACAATTCAAATTATCATTGCCTAATTATAATTTAGACTATGAAAACTATGAGCAGAATGTGTGTTCACCGCCGAAAGCCAAACCACTCCTGGGAAAGAAGTTGGTGCTGCCAGCATCAAAATTACAACCAATACCACCGGATTTGTTGCTCAAAGTGGGGAAATTGGCATCATTCACCAAATCTAACATGATTTTACCACAAATTAAGCCGTCCACAGCCTCAACATTAAACCTGAAAGTAACTGTCGGATCATCAGTCTtaacacaaacaataaaaacatcAACCAGTAAACCAATTGAGAAACCTTCTGTAGACTCAAATTCCATCCTGACATCGCTCTCAAACGCTTTGAAAGATGACCTAGAAAATATGGTGACTACTCAAAGTAATATGAACCATATGAGCCAAAAGAATTCAATTTTGAGTTTCAATGTAAACTCTTTGCCTAAAGATTTTCTTTCTGGCGCTATTTTGACGAAAATTGATGATAAAGATGATGATTATGAAAAGGGGGTGGAGACTAATGAGGATCATCCTATGGAGATTGATGAAGatTGTTTGTCTGTGGTTCCTGTAACGTCTGCCGATGATGGAGACTTAGTATTACAAGTTGAAGGCTTACAGTCAAAATCCGACTCTACTTCCGAAGTGAGCGAATACCTAAACCTGCCGTCGCTAGATGGCGCTGATGAAGAAAGTGACGCACATAAGTACATCCTCAGCAAGTTGGAGATACTCAACGAAGAGGATGAAGATGATGACGACGATGAAGGACACACAATAGTCGTAGACGGTGAAAACGGCTCAATTCTCCGAATGGTGGCCGGACAGAAGTTTATATACGAGGGCGGAGAGATATCACTGGTAAtgcctgatgatgatgatgatgagcagCAAGACGGTGATGGTGATCATCTCGAGAATGGTGATAGTCAAGATTCTAATGATGAATCTCAGATCGAGTTACAAGTGTCTGGCGACGAGGAAACTGCGAACGCTATCATTGCTGCTGCTCAGGAacaagGCGGCGCCTTCATAAAGGTGGAGTCAGGCGAGATGTTCCGCGTCAAGTCCGTGTCGAGCGCGACACCCGAAGCGGACGCGCCCTTGCAGATCGTGGCGCAGGAAGGGAACTTGTTCAAGTGTTTACTGTGCGAGAAAAATGACGAAACCCCTTCAAGTGTTGAAGATGCAGACACAATGATGCGTCACTTAAAATCACAGCACGACGCGAGAATATACCTGTGTCGCTTCTGTGGCGCCGTCATGAGGAAACGAACGGAATATGCCAAGCATAtagCGTCTCACGCGCACGACGCGGCCGGCCCCAAGCCGGGCGCGCACCGCTGCGGCGCGTGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCCGGCGCACGGCCCTACGCATGCGCGCTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAAGCGCACCTGAAGACTCACGCGTACGTCACCTACCTGCACCGCTGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCCGGCGCACGGCCCTACGCATGCGCGCTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAAGCGCACCTGAAGACTCACGCGGTGAGTGTACGAGTACGTCACCTACCTGCACCGCTGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCCGGCGCACGGCCCTACGCATGCGCGCTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAAGCGCACCTGAAGACTCACGCGTGTACGAGTACGTCACCTACCTGCACCGCTGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCCGGCGCACGGCCCTACGCATGCGCGCTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAAGCGCACCTGAAGACTCACGCGTACGTCACCTACCTGCACCGCTGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCCGGCGCACGGCCCTACGCATGCGCGCTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAAGCGCACCTGAAGACTCACGCGGTGAGTGTACGAGTACGTCACCTACCTGCACCGCTGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCCGGCGCACGGCCCTACGCATGCGCGCTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAAGCGCACCTGAAGACTCACGCGTGTACGAGTACGTCACCTACCTGCACCGCTGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCCGGCGCACGGCCCTACGCATGCGCGCTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAAGCGCACCTGAAGACTCACGCGGTGAGTGTACGAGTACGTCACCTACCTGCACCGCTGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCCGGCGCACGGCCCTACGCATGCGCGCTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAAGCGCACCTGAAGACTCACGCGTGTACGAGTACGTCACCTACCTGCACCGCTGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCCGGCGCACGGCCCTACGCATGCGCGCTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAAGCGCACCTGAAGACTCACGCGGTTCGCCCGCGTCCCTACAAATGCACTCAATGCGGTAAATCGTTCCTCACGCAGCAAAATCTGAATCAGCATGAGAAAACACATTCAGGCGTCAAGGATTTCGTCTGTAATATATGCAACAAAGCGTTCAGTACGCAACACAACTTGGAAGTGCACGGCGTGGTTCACTCCGGGAACAAGGCGTTTGTGTGCAGCGTGTGTGGCAAGGCGTTCGCTAGGAGAGCTGAGTTGAGGGACCATATGCGGATACATACGGGTGAGCGTCCATTCTCGTGTGATATCTGCGGGTCTCGTTTCACTCAGCGCTCGAACTTACATTCGCATCGTAGAGCGACGCACTTCGACGATAAGCGATACCACTGCGAACTGTGTCCGAAGAAGTTCAAGAGGAGGAGATTACTGGAATACCACATAAAGGCGTCGCACACTGGCGAGCGGCCACTGAAGTGCGGCATCTGTCACATGTCCTTCGTGTACCCCGAGCATTACAAGAAGCACGTGCGGACACATAGCGGGGAGAGGCCATACGTTTGTGAGGCCACGGAACCAGCAAAGACATCTTTTTCACTGCTAATGGAGTTGACAAGAGAAAGTATGCGATAA
- Protein Sequence
- MNQCCFICNNRAGLSLRNASSLFGEHNTLQSGKKVSEVVSEIVGKPVLENKVHTNILCKKCFKTCSEYDSIQVRLQTIKTDLLGQFKLSLPNYNLDYENYEQNVCSPPKAKPLLGKKLVLPASKLQPIPPDLLLKVGKLASFTKSNMILPQIKPSTASTLNLKVTVGSSVLTQTIKTSTSKPIEKPSVDSNSILTSLSNALKDDLENMVTTQSNMNHMSQKNSILSFNVNSLPKDFLSGAILTKIDDKDDDYEKGVETNEDHPMEIDEDCLSVVPVTSADDGDLVLQVEGLQSKSDSTSEVSEYLNLPSLDGADEESDAHKYILSKLEILNEEDEDDDDDEGHTIVVDGENGSILRMVAGQKFIYEGGEISLVMPDDDDDEQQDGDGDHLENGDSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMFRVKSVSSATPEADAPLQIVAQEGNLFKCLLCEKNDETPSSVEDADTMMRHLKSQHDARIYLCRFCGAVMRKRTEYAKHIASHAHDAAGPKPGAHRCGACGKCYSSRTLLAEHANLHSGARPYACALCGKAFASKYTHQAHLKTHAYVTYLHRCGKCYSSRTLLAEHANLHSGARPYACALCGKAFASKYTHQAHLKTHAVSVRVRHLPAPLRQVLQLAHAAGRARQPALRRTALRMRAVREGLRLQVHAPSAPEDSRVYEYVTYLHRCGKCYSSRTLLAEHANLHSGARPYACALCGKAFASKYTHQAHLKTHAYVTYLHRCGKCYSSRTLLAEHANLHSGARPYACALCGKAFASKYTHQAHLKTHAVSVRVRHLPAPLRQVLQLAHAAGRARQPALRRTALRMRAVREGLRLQVHAPSAPEDSRVYEYVTYLHRCGKCYSSRTLLAEHANLHSGARPYACALCGKAFASKYTHQAHLKTHAVSVRVRHLPAPLRQVLQLAHAAGRARQPALRRTALRMRAVREGLRLQVHAPSAPEDSRVYEYVTYLHRCGKCYSSRTLLAEHANLHSGARPYACALCGKAFASKYTHQAHLKTHAVRPRPYKCTQCGKSFLTQQNLNQHEKTHSGVKDFVCNICNKAFSTQHNLEVHGVVHSGNKAFVCSVCGKAFARRAELRDHMRIHTGERPFSCDICGSRFTQRSNLHSHRRATHFDDKRYHCELCPKKFKRRRLLEYHIKASHTGERPLKCGICHMSFVYPEHYKKHVRTHSGERPYVCEATEPAKTSFSLLMELTRESMR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -