Bvim050497.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachylomia viminalis
Gene Symbol
-
Assembly
GCA_937001565.2
Location
CAKZJP020001402.1:670575-698312[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 9.6e-05 0.014 17.4 2.2 1 23 431 453 431 453 0.97
2 20 0.005 0.71 12.0 0.6 1 20 459 478 459 481 0.94
3 20 2.5e-05 0.0036 19.2 5.6 1 23 500 522 500 522 0.98
4 20 0.00012 0.017 17.1 4.1 1 23 528 550 528 550 0.99
5 20 4.5e-05 0.0063 18.5 5.3 1 23 556 578 556 578 0.97
6 20 1e-05 0.0014 20.5 7.4 1 23 584 606 584 606 0.97
7 20 8.6e-07 0.00012 23.9 2.9 1 23 612 634 612 634 0.97
8 20 0.00012 0.017 17.1 6.7 1 23 640 662 640 662 0.97
9 20 0.00012 0.017 17.1 6.5 1 23 668 690 668 690 0.97
10 20 5.9e-07 8.3e-05 24.4 1.9 1 23 696 718 696 718 0.98
11 20 1.2e-05 0.0016 20.3 7.7 1 23 724 746 724 746 0.98
12 20 3e-05 0.0043 19.0 6.6 1 23 752 774 752 774 0.98
13 20 2.4e-06 0.00034 22.5 4.2 1 23 780 802 780 802 0.98
14 20 8e-06 0.0011 20.8 5.0 1 23 808 830 808 830 0.96
15 20 2.6e-06 0.00037 22.4 5.0 1 23 836 858 836 858 0.98
16 20 3.7e-06 0.00052 21.9 6.0 1 23 864 886 864 886 0.98
17 20 7.1e-05 0.01 17.8 7.9 1 23 892 914 892 914 0.97
18 20 7.3e-06 0.001 20.9 5.4 1 23 920 942 920 942 0.98
19 20 0.00088 0.12 14.4 0.3 1 23 949 971 949 971 0.96
20 20 0.38 53 6.1 4.9 1 23 983 1005 983 1005 0.99

Sequence Information

Coding Sequence
ATGAATCAGGATCACCATAATATGAATACGGGTGGTGGCCAGCCTCCGGGAAGTTCTGAGTCACAGGGCCAAAGAGTTCAGGCCACCCAGCAACAACAGCAGAATAACTTGCCTGCCACGACATCTGCTACTGATTTGCGAGTGAACTCGGCTGCAGTGAACGTTGCTTTGTCTAGTGTCGCGAAATATTGGGTGTTTACAAATTTATTCCCCGGACCGATACCGCAAGTGTCTGTGTACGGATTGCCTGCCGGTGCCAGGATTGAAAATGGGAAGCCTATCCAGGATCTTGGTCAAGCTCATGCCAGTATACTGAATGGTGATCCAAATATTATACTTGGGCATCATGCGGGCCAGTCCCAAGTTACTGTATCTGCTCCCGGTGGCCAGCAGATACCAGTCTCGCAGATCATTGCTACACAGTCTGGACAAACTCATGAAGCACTTGTGGCCCATAGTCAGCAGCAAGCCGAGCTGGTGGCGGCCCAGGGATCCGGCAACAATGCCCAGGTGTCAATTAGTGCCGGCCAGGCCACTCACCAGCAGGTACCCAATAATCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATCACGTGGGCCACCATTCTCAACAACACATAATGCAGCAGCAACTGATGGCGCAGGCGCGGCCAGATCACAACAACCAACAGATTCAGCTGACGGTAAGCGAGGACGGCATAGTGACGGTGGTGGAGCCGGCGGGCACAAAGATGGTCGACAAGGAGGAACTCCATGAGGCTATCAAGATGCCCAACGACCACACGCTCACCGTGCATCAGCTGCAACAGATAGTGGGACAACAGGTAATAGACAGCGTAGTACGCATAGAGCAAGCGACCGGTGAGCCGGCGAACATCCTAGTGACCCACAATCCTGATGGCACGACCTCTATTGAAGCCAGTGCCGCCGACCCTCTGATTGTCAAGGATGAGAAGAGTGCTAACAAAATAGAGACCGCACAGTTCGCTATACCTGCTGAGATAAAGGATATAAAGGGAATTGATTTGAAGAGTGTAGGAGCCATGGGCATGGAAGGAGCAGTCGTGAAGATTTCAGCTGGCGCGTCAGAGCACGACCTACACGCGATGTACAAAGTCAATGTAGAAGATCTTTCACAACTGCTTGCTTACCATGAAGTATTCGGAAAACTTAATTCAGAAGGCCAGCAGCAACAAGCAAAGGTAATAAGCGAGGTGGAAGTAGAAGTGGAAGCTGGCACCAGCGCAGCCATGTCTGAAGCAGAATCCTCGCCAGGCCACCACTCTTGTGATATCTGTGGGAAAATATTCCAGTTCCGATACCAACTTATTGTTCATAGGCGTTATCATGGCGAAAGTAAACCATTCACGTGTCAAGTTTGCGGTTCCGCATTTGCAAATCCTGTTGAATTGTCGAGGCATGGAAAATGCCATCTCGCTGGAGACCCGAACGAAAGACACGCCAAGAGAATGGCGCAAGATAAGCCATACGCTTGCACAACTTGCCACAAAACGTTCTCTCGTAAAGAACATTTGGACAATCACGTTCGAAGTCACACTGGAGAAACGCCTTACAGATGCGAATTCTGCGCGAAGACTTTCACCCGTAAGGAGCACATGGTCAACCACGTACGTAAACATACGGGTGAAACTCCGCACCGATGTGATATTTGCAAGAAGAGCTTCACCAGAAAAGAGCATTTCATGAACCATGTTATGTGGCACACAGGTGAAACGCCGCACCATTGTACAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGCGATCTCACACGAACGATACTCCGTTCCGATGCGAACTGTGCGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATCCTGTGGCATACGGGAGAAACCCCGCACCGCTGCGACTTCTGTTCCAAAACGTTCACTCGTAAGGAGCATCTCCTGAACCACGTCCGTCAGCACACGGGCGAATCGCCTCACCGTTGCAACTTCTGCAGCAAGTCATTCACGCGCCGGGAACACCTTGTCAACCACGTGCGACAACACACGGGGGAAACGCCCTTCCAGTGCGGATACTGTCCTAAAGCGTTCACAAGGAAGGATCACCTCGTGAACCACGTCCGTCAGCATACCGGCGAATCCCCGCACAAGTGTTCATACTGCACAAAGTCCTTCACTCGCAAGGAACACCTGACGAATCATGTACGACAACACACGGGCGAGTCTCCGCACCGATGTACTTACTGCGCCAAGTCCTTCACGAGGAAGGAACACCTCACTAACCACGTTAGACAGCACACGGGAGAAACGCCACACAAGTGTACGTACTGCCCGAGGGCCTTCGCGCGCAAGGAGCATCTCAACAACCACATCCGACAGCACACCGGCGTCACTCCGCACGCTTGCTCCTACTGCAGCAAGAGTTTCACCAGGAAGGAACATCTCGTTAACCATATTCGGCAACACACGGGCGAGACTCCGTTCAAGTGTACGTACTGTTCAAAGTCGTTCTCTCGTAAGGAGCACCTCACGAACCACGTGAACCTTCACACAGGAGAAACGCCCCACAAATGTCCCTTCTGCACAAAAACATTTTCCAGAAAGGAACACTTGACAAACCATGtcagGATCCACACAGGCGAGTCGCCGCACCGCTGCGACTTCTGCCAGAAGACGTTTACTCGTAAGGAGCACTTGACGAATCATCTGAAGCAGCACACCGGCGACACCGCACACGTTTGCAAGGTGTGCTCCAAGAACTTCACCAGGAAAGAACATCTTGTCACACACATGAGGTCGCACAGTTGTGGCGAGCGTCCTTTCAGTTGCGGCGAGTGCGGCAAATCTTTCCCGTTGAAAGGCAACCTACTATTCCATGAACGATCCCATGCCAAGAACAATGCTAATGCTGCCAATAAGCCGTACCGATGTGAAGTCTGCTCTAAGGAATTCCTCTGTAAAGGCCATTTGGTGTCTCATCGGCGCACACACGCGGAGTGGGTGGAAGGAGCTACGACCGGCGAAGCACCCGCTGAAACAGAAGACTGTACTGATAATAAGTGTATCAAAGTCGAGCCAGAACGAACTGAAAGAAAACATGAAGTCAGGACAACAGTGGAAACGAGACCAGCTGAGACCAATGTTGCACAAACTCAGCCAAACACAGCTACTGTTATGATAACCAATAATCAACAAGTGCGCGCGCCGACAGTGAGCGCGGTGGGCGCGGCGGCAGGCGCGCCCACGTTCGCGCACGCCGTGCAGTCCGCGCACGCCGTGCAGGCCGCGCACGCCGTGCAGgccgcgcacgccgcgccgcaCCACGCCGGCGCCACGCTCGCGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence
MNQDHHNMNTGGGQPPGSSESQGQRVQATQQQQQNNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARIENGKPIQDLGQAHASILNGDPNIILGHHAGQSQVTVSAPGGQQIPVSQIIATQSGQTHEALVAHSQQQAELVAAQGSGNNAQVSISAGQATHQQVPNNRVEFVQHHNIDMVNHVGHHSQQHIMQQQLMAQARPDHNNQQIQLTVSEDGIVTVVEPAGTKMVDKEELHEAIKMPNDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLIVKDEKSANKIETAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEGQQQQAKVISEVEVEVEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRMAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFARKEHLNNHIRQHTGVTPHACSYCSKSFTRKEHLVNHIRQHTGETPFKCTYCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDTAHVCKVCSKNFTRKEHLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHAKNNANAANKPYRCEVCSKEFLCKGHLVSHRRTHAEWVEGATTGEAPAETEDCTDNKCIKVEPERTERKHEVRTTVETRPAETNVAQTQPNTATVMITNNQQVRAPTVSAVGAAAGAPTFAHAVQSAHAVQAAHAVQAAHAAPHHAGATLAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01030446;
90% Identity
iTF_01030446;
80% Identity
-