Bvim039557.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000529.1:21404-22738[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-07 7.1e-05 24.0 0.1 2 40 16 54 15 59 0.84
Sequence Information
- Coding Sequence
- ATGGTTTGTACCTACAAAAGAAAAACGAATCGACAAAAATGGGACGAGGCAGACATGAGAAGAGCAGTGTCGGTTGTGCTTCTCAATAGAATGGGGTTTCTCAGGGCTTCTGCTACTTATACTGTGCCAAAATCAACTTTAGAACGACGAGTAAAAAAAGCTCGCCAGTCTCAGAATGCAGATACAGATTCGGAAAATTACTACGGGAAAAAAGGTTTAGGGCACTTTAAACCCGTGTTTACAAAAGAGCAAGAAGAAGAGTTGGCCACTTATGTAAAAATGATGCAATCCCGATTATTCGGAATTACTGGGACAGAGCTAAGGATACTAGCTTTCCAACTagctataaaaaataatatcgaGAATCCCTTTAATCGAGAAGATGGTATGGCAGGGAAGAACTGGCTTAGTGGGTTTCTAAAACGCCATCCAGACATATCATACAGGCAACCAGAACCAACTTCTGCGGCTAGGGCGATGGGACTTAATAGAGTCGCTGTAAATAGCTTTTTTGATCTATTGGAAAGTGTTGTGGATAAACATGCACTGACTGCAGATAGAATGTATAACGTGGATGAAACGGGTATTAGCACTGTGCCGAAAAAACAGTCCAAAATTTTATCACTGAAAGGACAGAAGAAACGCATGAAGAATGAGCTTCTAGATGGTGCACCAGCAGGCTTTTGGGGAACCTGCAGCGACAATGGCTGGATAACTTGCCCATTTTTTTTCGATTGGTTCAAACGTTTCGTGGACTTTACAAAGCCTTCTAAAGACAAAACAGTTTTGCTTATGTTAGACGGCCACGTGTCCCACACCAAAAATCTGGATCTCATAGATTATGCCAGAGAAAACAATGTTATATTGTTGTGTACACCGCCACATTGCACTCATAGAATTCAGCCCTTGGACGTGTCCTTCATGCGGCCACTAAGCACATTTTACAGTGCTGaagtaaaaaaatggttaagAGATCATCCCGGACGCGTAGTAACTTCCTGCCAAGGTGCAGACCTTTTTGGGAAAGCTTTTACACAAGCATCAACCATGAGCACTGCTataaatggtttaaaaaaatgtggcaTATGGCCTGTTGACAGGAATGTTTTCACAGAAGTAGATTTTATAGCTGCGGAAACCACCAACACTGAGACCCTTGTCATTGAAGGCCTAAATACGCAAAATGCAGGAGACGTACCAACACCATACTGCGAACCTTGCGCCATACTGCGAAAGCAGCTCAATTGA
- Protein Sequence
- MVCTYKRKTNRQKWDEADMRRAVSVVLLNRMGFLRASATYTVPKSTLERRVKKARQSQNADTDSENYYGKKGLGHFKPVFTKEQEEELATYVKMMQSRLFGITGTELRILAFQLAIKNNIENPFNREDGMAGKNWLSGFLKRHPDISYRQPEPTSAARAMGLNRVAVNSFFDLLESVVDKHALTADRMYNVDETGISTVPKKQSKILSLKGQKKRMKNELLDGAPAGFWGTCSDNGWITCPFFFDWFKRFVDFTKPSKDKTVLLMLDGHVSHTKNLDLIDYARENNVILLCTPPHCTHRIQPLDVSFMRPLSTFYSAEVKKWLRDHPGRVVTSCQGADLFGKAFTQASTMSTAINGLKKCGIWPVDRNVFTEVDFIAAETTNTETLVIEGLNTQNAGDVPTPYCEPCAILRKQLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00124189;
- 90% Identity
- -
- 80% Identity
- -