Bvim048168.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000900.1:61616-64267[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-07 6.3e-05 24.2 0.1 1 38 16 54 16 57 0.92 2 2 1 3.7e+02 2.5 0.2 23 40 507 524 507 527 0.87
Sequence Information
- Coding Sequence
- ATGCCACGTAAATACTCCCGAACCTCTTCGCGGGCCACTTCTTATACAAAAGAAGCGCTGCAATTAGCCAtgcagaaaataaataataaggagCTCACCTATGCAGCCGCTTCAAAAATGTACGGCATACCTACATCCACACTTAGTGATAGAATCCTGAAGAAAACAGCGATAGTATACGTGGCAGGAAACCAAACCACAAGTCCTGCGATTATACCAAAGAACAAATATGATCCAGAAGCTTATGCACGATGGCAAAAACACATGGCTTCGGTGACTTTTAAACAACCGAAAACTCCAACACAGATATGTGTAAATGAAATTAATAAGATCATGTCTTATAACGGCTCTACttctacaaataataatattgataactCAAAATTTTTGGACTCACCGACTTTAGAACATAGAAACAGTCTGCTACAACCGCTCGCCAGTTTCGAACAAATGCTTCTAGAAAAAGTTTCAAAACACCCTCTAAACTCTAAGAACAATATAGCTGTTAAGTTAAAACGAGTCGCGAAAGGTGCCGAAGTGATTACAAAGTCTTTTCTAGAAAAACAGCAAGAGATAGAATTAACAAAGGAAAAAGAAATACGGAAGACAACAAAACGGAAACAAAAACTTCAATCTAAAAATGACGCATTTGATCCTATACCAGGACCATCTGGAATTCAAGATAAAAACTTAAGAACAGAAGCAACTGTaatgaatgtgccgattttgaCTAATAAGAACAACACTGACGTGTGTATTTCTAAAAAAGGCAAAGGAGTAGGGAAAAAAACTAGAGCTGACAAAGAAAATGATTCAAAAGTGGACAAGTATGATGAACACAAGAAGAAAAGTGTATTAAATAAATCAGGCCAAAAGAAAACTACAAAGACAACTATGAAAAAGCGTAAAAGATCTAATAGCAGTGTAACGACAATTGAAATTGTTCAGATGAGCATACATAGTGATTCTGACTTATTAGATTCttttattgacatattatctGACTGCGATAAATTGACTGACTTTAATATGTATGAGGAAAACAAGACTGACTTGGAATTAGCATCTAGGGAACAACAAATTGAACAAATACTTAAAGAAATACAGGACATGGATAATAATCAAGAGAAAAAAGCAAGCCAAAGGGATGATACCTGCGAAGAGAGATGTGACATAATTCCAGAAATTCATACTAAAGAGACAAATGTTAAggcaaatgataataataaagtgACTATCTTATcatctgtaaaaatcacaccaGAAAACCAAGCTTTCTATAAAATTTTACCCAGAAGTTTACAACTAAAGCCAATTGATAAAGATTTAGATTTGTTTACTAACCAAAAGCGAAAACTGGCACACAGTACAAGCGTATCTAATAtaccaaagaaaaaaacaaagaaagttaATTGCCCtataaaaataaagacaaaagaTCAAAAGGATTTAAGTGGAAACTTTTATATCAAcattgataatgatgatgatggtgagacCAAAAATTATATTGATGATTCGAAGAAATACAGTATTGGGGATACAGTTCTTGTTAGATATTTCAAACGAACTTGGACATATTACGTCGGTATCATTGAAAATATTGATATCAATTCAAACCCAAATATGTACAACATAACATTCTATAGAAATGTTGGCaagaaaaacaacataaaatttgTTATTCCTAAGCGTAAAGATCAAGACTGCGTACCTGATTCTAATATAGTTAAGGTGATATAA
- Protein Sequence
- MPRKYSRTSSRATSYTKEALQLAMQKINNKELTYAAASKMYGIPTSTLSDRILKKTAIVYVAGNQTTSPAIIPKNKYDPEAYARWQKHMASVTFKQPKTPTQICVNEINKIMSYNGSTSTNNNIDNSKFLDSPTLEHRNSLLQPLASFEQMLLEKVSKHPLNSKNNIAVKLKRVAKGAEVITKSFLEKQQEIELTKEKEIRKTTKRKQKLQSKNDAFDPIPGPSGIQDKNLRTEATVMNVPILTNKNNTDVCISKKGKGVGKKTRADKENDSKVDKYDEHKKKSVLNKSGQKKTTKTTMKKRKRSNSSVTTIEIVQMSIHSDSDLLDSFIDILSDCDKLTDFNMYEENKTDLELASREQQIEQILKEIQDMDNNQEKKASQRDDTCEERCDIIPEIHTKETNVKANDNNKVTILSSVKITPENQAFYKILPRSLQLKPIDKDLDLFTNQKRKLAHSTSVSNIPKKKTKKVNCPIKIKTKDQKDLSGNFYINIDNDDDGETKNYIDDSKKYSIGDTVLVRYFKRTWTYYVGIIENIDINSNPNMYNITFYRNVGKKNNIKFVIPKRKDQDCVPDSNIVKVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -