Bvim035612.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000439.1:587003-588421[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.6e-09 2.4e-06 28.7 0.0 3 43 6 45 4 46 0.93
Sequence Information
- Coding Sequence
- ATGACTGAGAAAATGGAGGCCTTATTAATGGCTATGGAAGCAGTTGAAAAAGGGGCCTCAATTTCAGCTGCTGCCAGGCAGTTTGGGATCCCACGGTCCACGTTGGACGATAAAATTCGCGGCCGCTACCCTGTTGATTGCATCAAGGGACCGGCTACAGTATTATCAGAAGAAGAGGAAGACCGTTTAAAAAGGTGGATTATATATATGACAGATAGTGGGTTTCCAGTAACAAAGGCCCAGTTATTGGATAGTGTGAGTTTATTCGTAAAAAAGATGCACCGACAGAACCCATTTCAAAATAACAGACCAGGTCGTCACTGGTTTGAGGCTTTCATAAAGCGACACCCCGAAGTAGGCCAGCGAGTGACCCAAAATTTGACGCAGACCCGTGCTTTAGTCCAAGAAAGCAATCTAAGAGCGTGGTTTAAAGAAGTAGAAGAATACTTTCTTATGGAACAGCTCAAAGAAGCAGCTCAAGATCCACGTAGGATATTTAATTGTGATGAAAGTGCATTATTTTTGTCACCAACAGATAACAAAGTTTTAAGAAAACGTGGCGCAAAAAATGTTCATAACATCCCGAGTAGTGAAAAAGTGCGTGTGTCAGTCCTGCTTACGACAAATGCAGCGGGTGAACTGGCACCACCAATGGTGTTGTTCAAACTAAAATCAATACCCCACAAAATTTCGAAAACTGCACCTAAAGACTGGGAATTAGGATTTACACCAAAGGGCTCATTGACAGGAGAGTCATTTTACGAGTACATGGCAAATGTTTTCTATCCCTGGATTGaaaaaagttatattaaatTGCCCATAATCTTTTTCTTAGATGGACATAGCTCACACACGACGCTTCCTCTAAGCATTTTCTGCCGTGAAAAAAACATCCACCTGGTCGCTCTGTATCCAAATGCAACTTATCTTCTTCAACCGATGGATGCGGCTGTTTTTAGACCGTTAAAGAGGATCTGGAAAAAAGCAGTTTATGACTGGTGCAATTATAATCAGTCTGCGAAACTTAGAAAAGAAAATTTCTGCCCGTTGCTACTTACATCACTTAAGCAATTGGACCCCAACTCGATCAAAAATGAATTTCGCAAATGCGGGTTGTCACCTTTTGATCCAAACAGTGTCGATTATTCCAAATGTGCCAAACCAGATAACGTTAACCAAGTGCATTCAGATACCGTTGGCCATTTCAAATACTTTGAATCGCATATAAGTCCTGAAAACCTCGAAGCTTTTAATGGCAACAAAAGTCCAACGTGGAGAGGAGATAAATCTTTAGAAGGATTATTCAATGTCTGGAGGCAAATGAATACATTAGCCTCCAGACCTACTCAAAATAATTTGTCTTCAGAGAGATTCCGCGCAGGATATTTTTCAAAGCCTGCAGTTGACATACAAGGCTGA
- Protein Sequence
- MTEKMEALLMAMEAVEKGASISAAARQFGIPRSTLDDKIRGRYPVDCIKGPATVLSEEEEDRLKRWIIYMTDSGFPVTKAQLLDSVSLFVKKMHRQNPFQNNRPGRHWFEAFIKRHPEVGQRVTQNLTQTRALVQESNLRAWFKEVEEYFLMEQLKEAAQDPRRIFNCDESALFLSPTDNKVLRKRGAKNVHNIPSSEKVRVSVLLTTNAAGELAPPMVLFKLKSIPHKISKTAPKDWELGFTPKGSLTGESFYEYMANVFYPWIEKSYIKLPIIFFLDGHSSHTTLPLSIFCREKNIHLVALYPNATYLLQPMDAAVFRPLKRIWKKAVYDWCNYNQSAKLRKENFCPLLLTSLKQLDPNSIKNEFRKCGLSPFDPNSVDYSKCAKPDNVNQVHSDTVGHFKYFESHISPENLEAFNGNKSPTWRGDKSLEGLFNVWRQMNTLASRPTQNNLSSERFRAGYFSKPAVDIQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -