Bvim013977.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000128.1:995334-996155[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.2e-10 3e-07 31.6 0.1 4 43 15 54 12 56 0.90
Sequence Information
- Coding Sequence
- ATGTCAACTGCAAAGAAAAAGCGTGCCTCGTGGACACAAAGTGATATAGAAGCTGCTGTTACTGCTGTTCAGACAAACATGTTATCTAGTTATAAAGCAGCTAGTAGTTATAACATCCCTAGAAGAACATTACGGGATTATTTAAAGAGTGGAATGTCCAAACTAAATTTAGGTAGAAAATCAATATTTACTAGGGAACAGGAACAAGATTTTGTGAAAAGGATTATTAGGTTTGCAGATTTGGGGATCCCGTTAACGCCAAAGATGATACGCAGACAAgcatttgtattttgtgaaacaTATAACATTACTAACAAATTTACCAAGCAATTAGGCATTGCAGGACGAGACTTTCTTAAGTTATTCCTAAAAAGAAATAGCAATGTAGCAAAACGCAAAGCCCAATTTTTAAATCAAGCCAGAGGCCAAAAATTCAACAAAGCAATCGTTTCACATCATTTTAAAGAAGTGGAAAAATTATATGACGAATTAGGAATCCGTTACAATCCTGAGAGGCTTTACAATATGGACGAAAAAGGTTGCCGTTTAACGATGCACAAACAACCTACAGTAATCGCTCAGAAAGGAACAAAAAGAGTTCATTTACAAGCATCTGAACATGGCGAAAATGTCACGATCGTAGGTTGTGCAAATGCGTTAGGGAATTCTATACCACCAATGATAATATTTAAAGGCGTTCGAAGGAAGCCAGAATTCGAATTAAATCTGCCTCCAGGTTCAACTGTTAGAATGGCTCCGAAGGGAAGCATGACTTCAGAGCTTTTTATTGACTTCCTCGGGAAACTGCCTTCTTATATTTGA
- Protein Sequence
- MSTAKKKRASWTQSDIEAAVTAVQTNMLSSYKAASSYNIPRRTLRDYLKSGMSKLNLGRKSIFTREQEQDFVKRIIRFADLGIPLTPKMIRRQAFVFCETYNITNKFTKQLGIAGRDFLKLFLKRNSNVAKRKAQFLNQARGQKFNKAIVSHHFKEVEKLYDELGIRYNPERLYNMDEKGCRLTMHKQPTVIAQKGTKRVHLQASEHGENVTIVGCANALGNSIPPMIIFKGVRRKPEFELNLPPGSTVRMAPKGSMTSELFIDFLGKLPSYI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00651677;
- 90% Identity
- iTF_01085083;
- 80% Identity
- -