Bvim022801.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- clz9
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000227.1:318637-325229[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.15 53 5.2 0.0 18 35 260 277 252 281 0.81 2 2 1e-07 3.6e-05 25.0 0.0 2 41 614 654 613 656 0.89
Sequence Information
- Coding Sequence
- ATGGAAAGACAAAACACCTGCGTGTCGTGCGATCGATCTGTGTTACGTCGTAGAAAACACAGTCTTAATGAAGTGTTTTTCGAAAGATACCGGGATCACGTAGTGTTGTTATTACAAGAAATCATACCACGCGAGGTTTCTTTTGACGGCACAAGATCTATTTGCCACCCTTGCTGGCAGAGATATGATCGAGGTTTACATAACCATCAATTAGATGATGTGCCACCCCAGCCAGTACAAGAAGGAGCAAATCAAGAAGAAGTTAGAGACGCAGAGGCGGCCCAACAAATAGATGTCGGGGATCAACAAGGTCTTGGTTTCATTACTGTTAGCGGATACAAACGTGTATCAAATACAGCGAGACGCTGTATATTTCTAAACTGCAGAGATATGAATACACATCGTGTGCCAACCTACGCCAAGTTTTATCTGTTGCACAATTACAATTTGTATATACCAGAACTTGCTCGAGTTTGCCACCCTTATTTAGTTCAAAATGATTGGGAAGAACTAGTGAATGTTCCGACAACACATGAAAGCTTTAATAATGCTCATGTACTAGACATAATCAATTTATATAAATGGGGATTAGAAAGCAGGTCTgaaatgaattttgaaaatattgaaacaatTGATAACAACGACTTCCACTTTTGGACAGCTCTAACTAAAAACCAGTTTATGACTATTTTAGAACAAACACCGTCTCTCCGTAACAGATCTGATCGTCCTGCTACCATTTTAGGAATTTATTTGACGAAAATAAGAACTGGTGAATCTGATGAGCGCTTAGCTACGAAATTCCAAATATCCAGGAGAACATTAGAGAGGAAGTTAAATATAGCGAGAGAATGCTTAACTGAAGATTTTATTCAGCGTTACCTGGGCTTAAATCACATAACCAGAGAAGAAGTGGTGGCACGAAATCTTCGTATCCCAACTCATATTTTTGGTGGTAGACAAAACGAGCCGGCAGCCATTCTTGTGTTCGACGGAACATATATATATCTTCAAAAGAGTGCGAATTTCCTTTTCCAAAGAAAAACTTATAGCCTTCACAAATTCCGCAACCTGGTCAAACCTTTTCTAGTCGTATGTACAGACGGCTATATAATAGATGTCGTAGGACCGTATTCAGCGACTACTTCGGATGCAACAATTATGCGTAGCCTGATGCGAGAAGACTCTGCTTGGCATTGGTATCTCAGACCTAACGACGTGTTTATATTGGACCGCGGCTTCCGGGATTCGATCCCTGCTATTGAAGAATGTGGATATAATCCCCACATGCCGCCAACTAGTAGAAGAGGCGAACAGTTATCTACACCTGAAGCTAATAAATCTCGATTAATTACAATGTGCCGTTGGGTGATTGAAACAATTAATGGACGATTTAagaaagattttaaaatatttcgacaTACTTATTTTAATGTTGCGATGCGAAATATGATGACTGATTTCAAAATAACCGCAGCAATTATCAACGCTACTCGGCGGCCATACGAAGATAATATATACGCCGAACAGTTTATGGATATCATAGATCAAAATGTAAATAGAGAAAATGAGTTAGCAGAATACGTAACAACAAATAACTTAAACAGACAAAGAATAGCATTCGTGCCTCTTGATGGAAATAGTCCAGATTTTGACGATTTTCCACAGCTGACCTTTGAGGATCTAGTCTTGTTCACGTTGGGCTCATACCATTTGAGAATCGCAAGGTCTTATTGTCACGAGCATATCCGACCAAACgAATTAAAACACAGAGCGACATTCCTGATGCCATCCGTGTACAGACGAAAGCCTGGCAGTCGTCGATACGTCGACTACACCCaggaagatttaaaaaaatgtctgGATGCAATCCAATCCAAAGTGCTCACACAAAGAGCGGCTGCAGAGTTATTTAACATTCCTCGCAGCACTTTGAAAAACAAATTAGCCCGGAAGCACCCCAACAAACCAGGTAAACCTACAATTTTTACTGAAGAGGAAGAAAAGGCGTTTGAAGCTCACATAACTGCGCTTTCGGAATATGGGTTTCCGCTGACAGCATTTGACCTAAAAATGATAATCAAAAATTACCTTGAATCCCAGGGAAGAGTTGtaaaaatttttaagaacaacATTCCTGGTAAAGACTGGTTGGCTTCTTTTCTTTCACGACATCAATCTCTTTCACGGCGACTTGCTAACAATATCAAAAGAGTCCGAGCTCAAGTGTCGGAAGATGTCATTTCCAATTTTATAGAAAACATCGACAAAGAACTAGAAAGCGTTCCACCCGAAAACATATTCAACTACGATGAAAGCAACCTTTGTGATGACCCAGGAAAAAAGACTATATTATGCAGAAGAGGAACAAAATATCCGGAAACAATAGTAAACGCTACAAAAGTTAATTTTACTGTCATGTTCTGTGGCAACGCCGCTGGGGAAACAGTTCCACCGTTCATCGTTTATAAGTCGGATCATCTCTGGTCGACTTGGACTGAAAATGGTCCCGAAGGCGCTCGATATAATAGAACAAAGAGCGGATGGATGGACAGCGCAACTTTTGAAGACTGGTTTCTCAATCATCTTATGCCAGTTCTTAAGAAGAAAAATGGTAGAAAAGTGGTGATTGGAGACAACCTTGCTTCACAcattaataaaacagttttgaACGAGTGTGAGAAGCACAAtgttagttttatttgtttgccACCCAACGCTACACATATACTTCAGCCACTAGACGTCGCATATTTTCGACCTTTGAAGTGCAAGTGGCGGCAAGTATTGCTTCAATGGAAGAACAGTCAACTGGGTAGGAAACTGTCGACTACACCTAAGGATCAGTTTCCACGACTATTAAAAACGGCTTTGGATTCTTTGACCGAGACCAAGGCAAATTTGATTGCTGGTTTCAGAAAGACAGGCATATACCCCATTGACAAAGAGGAGCCTTTAGCTAGATTACCCAAACAAGATCGAATAATAAACGCAGGTCTTATAGGGAACTCTTTTATGCATAAATTGATGCAGTACCGAGCTGAGGCGTGCCCAGAACAGAAAacaattaggaaaaagaaaCTTAATGTACCACCTGGAAAATCAATCTGTGCCACTGACCTTGCAGAAGCAGGTCCATCGGGTTTACAGCAGGCTAAAACTATAAAGGAAAAGAAAAGGGCAACAAAACGAAGACAACGCAACGTCTCTTCATCTTCAAGCTGCAGTGACAGGACCATCAGTCTAGCTTCTTCCACAGAAGACCACATAATGCCTTATGACTCTGAGGATGATGATCTTCTGGCCAACTATGTGAGTCAGATTAGTGATACTGATGCACCTGCATTTGGACATTCGCCTGATCTTCAGCAAGATGTTATAACGTTCATCGAGCAGGAGAGTGAAGTAGAAGAGGAGTGTGGCTCTCCTGTTCTGCAAGTAACAGATGTAGAGCAACAGCTGTTTGATGGTTTTAAAGACTTCACTCCCCTTCAATCCATTGAGGATATACAGATCGTTGAAGAAAAATGTAGTGAAAGAGAGAAAATGCAGGTAGTTGTAGAAGATTGTCGAGACAAAAACTTGCGGGTCTCGCCCGCACGTCAAATCGAAAAGTTACCGCAGGATACGTTAGAGCCACCAGGTTTTCGAGGAGGTTCACTTGATCTAGATGTTGTTGTAGGCGACCATGTTCTAGTAACATGGAACTCACGCAAATACCCAGGTCAAGTCTTAGCAGTTTCCGAGGAAGGAGCCTTTATAACGTGCATGAAAAAAGGTAAGACGTACTGGCGGTGGCCCACGATAAAAGATAAACAACTTTATGGTAGGGACCACATAGTGTGTAAGATTGGACCTCCAAAATTGGAGAAAAAGGGTTGTTTCTCGGTTCCAGAAATGAACGAGTAA
- Protein Sequence
- MERQNTCVSCDRSVLRRRKHSLNEVFFERYRDHVVLLLQEIIPREVSFDGTRSICHPCWQRYDRGLHNHQLDDVPPQPVQEGANQEEVRDAEAAQQIDVGDQQGLGFITVSGYKRVSNTARRCIFLNCRDMNTHRVPTYAKFYLLHNYNLYIPELARVCHPYLVQNDWEELVNVPTTHESFNNAHVLDIINLYKWGLESRSEMNFENIETIDNNDFHFWTALTKNQFMTILEQTPSLRNRSDRPATILGIYLTKIRTGESDERLATKFQISRRTLERKLNIARECLTEDFIQRYLGLNHITREEVVARNLRIPTHIFGGRQNEPAAILVFDGTYIYLQKSANFLFQRKTYSLHKFRNLVKPFLVVCTDGYIIDVVGPYSATTSDATIMRSLMREDSAWHWYLRPNDVFILDRGFRDSIPAIEECGYNPHMPPTSRRGEQLSTPEANKSRLITMCRWVIETINGRFKKDFKIFRHTYFNVAMRNMMTDFKITAAIINATRRPYEDNIYAEQFMDIIDQNVNRENELAEYVTTNNLNRQRIAFVPLDGNSPDFDDFPQLTFEDLVLFTLGSYHLRIARSYCHEHIRPNELKHRATFLMPSVYRRKPGSRRYVDYTQEDLKKCLDAIQSKVLTQRAAAELFNIPRSTLKNKLARKHPNKPGKPTIFTEEEEKAFEAHITALSEYGFPLTAFDLKMIIKNYLESQGRVVKIFKNNIPGKDWLASFLSRHQSLSRRLANNIKRVRAQVSEDVISNFIENIDKELESVPPENIFNYDESNLCDDPGKKTILCRRGTKYPETIVNATKVNFTVMFCGNAAGETVPPFIVYKSDHLWSTWTENGPEGARYNRTKSGWMDSATFEDWFLNHLMPVLKKKNGRKVVIGDNLASHINKTVLNECEKHNVSFICLPPNATHILQPLDVAYFRPLKCKWRQVLLQWKNSQLGRKLSTTPKDQFPRLLKTALDSLTETKANLIAGFRKTGIYPIDKEEPLARLPKQDRIINAGLIGNSFMHKLMQYRAEACPEQKTIRKKKLNVPPGKSICATDLAEAGPSGLQQAKTIKEKKRATKRRQRNVSSSSSCSDRTISLASSTEDHIMPYDSEDDDLLANYVSQISDTDAPAFGHSPDLQQDVITFIEQESEVEEECGSPVLQVTDVEQQLFDGFKDFTPLQSIEDIQIVEEKCSEREKMQVVVEDCRDKNLRVSPARQIEKLPQDTLEPPGFRGGSLDLDVVVGDHVLVTWNSRKYPGQVLAVSEEGAFITCMKKGKTYWRWPTIKDKQLYGRDHIVCKIGPPKLEKKGCFSVPEMNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -