Bvim044992.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000687.1:141162-142971[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.5e-11 3.4e-08 34.6 0.0 4 37 11 44 8 46 0.92
Sequence Information
- Coding Sequence
- ATGCCAAAGATACCGCAATATACCAAAAAACAACTAGACAAAGCTTTAGAAGAAGTAAGCCAAGGTATATCAGTTCGTACAGCAGCCAAAAAATATGGTATACCTAGAGCAACGCTACAATTTAAATTGAAACACCCGGATAGCAAGAGTGAATTTGGACCAGAACCCTACTTGACTAGGGAAGAAGAAAAACAGTTAGAAGAATGGCTGTGCAATGTGGGCAAAAGAGGGTTTCCTAGAAATGCCGAAGACATTCTAGATTCTGTTCAAAACTTTCTGAATAAAAACCCCAGAGAGACACCATTCAGCGAAAATAGGCCTGGAAAAGGGTGGTTAAAAGGTTTTCTGAAACGCCATCCTAGAATAACTAAAAGAACGTGTGAAGCTGTTACGCAGGCGAGCGCATGTGTATCCGAATCTGACATCAGAAACTGGTTTGGTCAAATCATGGATCAGATAAACAAGTCTAATCTAACCCACATTTTAGATGACCCTTCCAGAATTTTCAATGCTGATGAAAGCAGTTTTCAAACCTGTCCATCTACCGGAAAAGTCTTTGCTGAAAAAGGAGAGAAGAATGTCTACACTATCGATAAAGGAAAAGCCAAAGAAAATATGACAGTACTTTTTACAATATCTGCTGATGGACAGATGGTTTTGCCTACGATTGTGTACCCCTATCAACGTTTACCTGAGAGAATCAAACAAACTGATGAGCAAAATAGTGCGAAAAATGACCACCAGACCTGTGAATATGAAAACTTTCCTCACTCTGACAAAGAACCCTTTACCATTCAACCTTCAAATAATGAACAAATCAACATTAATAGTGATCTACCGAATAACGACCAAGAACTTTTAACTTTAGAAGACCTAGGAATAGCAAACGCAGAAAACCATTACAATACTATCCTCCTGTTCAACAACAAGACTTACAGATTTTTTACCAATACCTTCAGGACCAACCACAAAAGGGAAACGTAA
- Protein Sequence
- MPKIPQYTKKQLDKALEEVSQGISVRTAAKKYGIPRATLQFKLKHPDSKSEFGPEPYLTREEEKQLEEWLCNVGKRGFPRNAEDILDSVQNFLNKNPRETPFSENRPGKGWLKGFLKRHPRITKRTCEAVTQASACVSESDIRNWFGQIMDQINKSNLTHILDDPSRIFNADESSFQTCPSTGKVFAEKGEKNVYTIDKGKAKENMTVLFTISADGQMVLPTIVYPYQRLPERIKQTDEQNSAKNDHQTCEYENFPHSDKEPFTIQPSNNEQININSDLPNNDQELLTLEDLGIANAENHYNTILLFNNKTYRFFTNTFRTNHKRET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158793;
- 90% Identity
- -
- 80% Identity
- -