Bvim042576.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000607.1:642785-645190[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.6e-11 2.4e-08 35.1 0.0 1 41 22 62 22 66 0.92
Sequence Information
- Coding Sequence
- aTGCCTCCTGAGAGgaagaaacttaaaaaaaatattaaaaaaacgagAACTCATTTTCAATATACCGAAGAGGCGTTAGCTAAAGCTGTTCAGGCCAtaagaattgaaaaaaaaagcattagAGAAACTTGTCGTCTTTTTGGTGTTCCTCGGTCAACAATCCAAGATCGAATTTCGGGTAGAACTAAAGAACAGCCTCGAAAAGTTGGTCCAGAGCCTATATTAGGCCTTGATGGAGAGAAAAAAGTTGTGGACTGGATTatagatttagcaaaatgtgGTATTCCTGTAAGCAAAGAAGTATTGCTGGAAACagttacaaaattaataaaagataTTGGAAAAGAAGATAAGTTTCCAGAAGGGCGACCAGGACAAACATGGTACCAAGGTTTTCTTAGAAGACATCCGGAGATTAGCTTACGTGAACCTGAAAGTATTAATAAAGCCAGGGAAGCGGTAAAAGAGAGCTCAATCAGAAAATGGTTTACAGAGCTTGAATATTTTTTGACTGAAAGAGGAATGGCAGACATCATGAAAGATTCTGACAGAATATTAAACGGTGATGAGACTGGAATTTCACTATGTCCAAAATCAGGTAAAGTCTTAGCCCCGAGAGGTTACAAAAATGTTTACGTTGTTAAAAGAGGCAACGAAAAAGAAACACTTACGGTTTTAATAATGATGACTGCATCGGGGAAAGTATGCCCTCCACTTGTGGTGTTTCCATACGTTAGACCGCCAAAAGCGGTTGTAGAAAACATGCCAGAAGGTTGGATAATAGGAAAATCTGAATCAGGTTGGATGCGTTCAGCTGTTTTTTATGAATACATTGCTAACGACTTTAATGACTGGTTAGTGAAGAATAATATAAAGAAACCAGTAATCCTTTTCGTAGATGGGCATAAATCACATATGTCAATGGCCTTAAGTGTTTTTTGTGATGAAAATGGCATTGTTTTATACGCTTTACCTCCGAATACTACTCACATTATGCAACCAGCCGATGTTAGTGTGTTTAAACCTTTAAAACaagaatggaaaaaaactttaaGAAACTGGCAGGCCAAATCGGAAAACCTCAATAAAACCGTGACGAAGACAAATTTTTGCAAAGTATTTAAGGAAACCCTGGATGTAGATATGACACAATCTATTAAGAACGGATTCAGAAAGTGTGGCCTATTCCCCTTCGATGTAGATGCAGTAGATTTCACAAAATGTGTAAAGGATTTTCAAGAAAGAAGGAAGAAGAGATCACTATCTTCCGGCGGGTTAACGGACCGAGATTTCACAAGTGCAGTAAAAGTGATTGTTGcgataaaagaaaatttattgaAGAAAGGGATTGATCCAGATACGGTCTGCAGTGAAATAGAGTTATTAAAATCGTCCTTCAGTAAAAATCGACGGTCAACTTCCAAAACACCACGTAAGTCTACTGAAGTTGTTAATTCTTCTGCGTTTAAAACACCTGAACAAATTAATTTTGACGATAATATGATAAGAAAGGCAAATGTCAATACTGCTGGAGGAGATGGTGTTAATGAAGACTATTCTTTGCTTGATGATATCTCATTTCCTGATGTTGGAGCGTACGTATCGCTAAGTGACAtttctattttaaaaatagcCGACATAAACTTAGAGGATTCAAATGCAACCCAAATTACTTTAGAAGAGATTCCTCAAGACGATAAACAGTATGATTCAGCACAGGCATTGTTACCTCTACAAAGTGACTGTGTACCATCTACGTCAAAGATAATTACAGTAGCTGAAGTACACACTCACCAGTCGCCATCGTCTCCAAAAAATGCGATCCATCATAATAGTAATAACGTGAATCCTGTTAATGATATATTATTAGGAAATACTTCGTGTATGCTGCAAAATAATAAGCAAAATGATCCATTTAAAAATCGTTTAAGATTTCCCATTAGTCCAACTGGAATCCtaactaaaaagaaaaatattaataaatttcctAGCGCCATATCTTCAGAAGCTTTTAGAAATTTTCACGATttaaaggaaaaagaaaaacaaaataagatagACGACAAAAATAAGAGAAAGGTTGAAagagaacaaaaaaaatgtgaaccgaaaccaaaaaaacagaaaatagttaataagaacaaaaaaacacttaattttCCTAAGAGTAAACAGACCGAAGACGAAAATGAGATTAACAAGGAACAAAAAACggacaataatattaaaaatattgatcaaGATAAAGAAATCAATAATAAGAAGACTAATAAAGTTACAAATGAGACTGACAAATCTATTATAGAGACTGATTtcgaaaatattaaagaaataaataaggaAAACGAGATGAGAATCATTATTGAAGACGAGGATGTTGATCACGAGTTAGACATTTTTCCGTAA
- Protein Sequence
- MPPERKKLKKNIKKTRTHFQYTEEALAKAVQAIRIEKKSIRETCRLFGVPRSTIQDRISGRTKEQPRKVGPEPILGLDGEKKVVDWIIDLAKCGIPVSKEVLLETVTKLIKDIGKEDKFPEGRPGQTWYQGFLRRHPEISLREPESINKAREAVKESSIRKWFTELEYFLTERGMADIMKDSDRILNGDETGISLCPKSGKVLAPRGYKNVYVVKRGNEKETLTVLIMMTASGKVCPPLVVFPYVRPPKAVVENMPEGWIIGKSESGWMRSAVFYEYIANDFNDWLVKNNIKKPVILFVDGHKSHMSMALSVFCDENGIVLYALPPNTTHIMQPADVSVFKPLKQEWKKTLRNWQAKSENLNKTVTKTNFCKVFKETLDVDMTQSIKNGFRKCGLFPFDVDAVDFTKCVKDFQERRKKRSLSSGGLTDRDFTSAVKVIVAIKENLLKKGIDPDTVCSEIELLKSSFSKNRRSTSKTPRKSTEVVNSSAFKTPEQINFDDNMIRKANVNTAGGDGVNEDYSLLDDISFPDVGAYVSLSDISILKIADINLEDSNATQITLEEIPQDDKQYDSAQALLPLQSDCVPSTSKIITVAEVHTHQSPSSPKNAIHHNSNNVNPVNDILLGNTSCMLQNNKQNDPFKNRLRFPISPTGILTKKKNINKFPSAISSEAFRNFHDLKEKEKQNKIDDKNKRKVEREQKKCEPKPKKQKIVNKNKKTLNFPKSKQTEDENEINKEQKTDNNIKNIDQDKEINNKKTNKVTNETDKSIIETDFENIKEINKENEMRIIIEDEDVDHELDIFP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00771826;
- 90% Identity
- iTF_00888178;
- 80% Identity
- -