Basic Information

Insect: Brachylomia viminalis
Gene Symbol: -
Assembly: GCA_937001565.2
Location: CAKZJP020000142.1:2860985-2868463[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 2.7e-07 9.7e-05 23.6 0.1 17 41 1 25 1 27 0.91

2 2 3.3e-11 1.2e-08 36.1 0.1 2 36 760 794 759 799 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	2.7e-07	9.7e-05	23.6	0.1	17	41	1	25	1	27	0.91
2	2	3.3e-11	1.2e-08	36.1	0.1	2	36	760	794	759	799	0.92

Sequence Information

Coding Sequence: ATGACAACATATAAAGCTTCTGATCGATATGGCATTCCAAGATCTACTCTCAGAAATCGTGTGAGAAGTCGAGAATTTTGCATAGTTTCTGGTGAAAAACCAGCGACAACTGAAATAGATCCGGAAAATCGGACACAATTCCAAGCGAAGAAAATTTTCGgcCACGCATGCGAAAATGCGCAGGCGCACGTCGTCCTAGACGAGGTGGGACCCCTGGGCGGGGTGGTGGAACGGAGAGAGGTGGTGGTGCCGGGCAAGGTAGTGGTGCCGGGGAAGGTAGCGGTGCCGGGCATGTTGATGCCAGTGAAGATGGTGGTGTTCTCACACGTGGTGGTGTTCGCACACGAGGTGGATCACGCCCACGTCGAGGTGGCGTACGCACACGAGGTGGTGATCAATAAGCTTAGATATGCCGGCGGCATCCGTCGACCAAATTTCTCCGGCGGACCTGTTGCCGTAGGTAGCGATGAAGAATCcgatgatagtgatgatgatgCTAATGAGCTGCAGCCGTTGATAGTGCCGAGGGTGTTGCGGCCATATTATAATATGGACGGAGATAGCGACGAAGAAGGCTCACCGGCACTTGTGGTCGACCAATCGTGGCCACCCACTCGCCCAGCCAGTCTCAATCCTGCAGCATCCATCGTGCCTGCAGCGCCTATCGAGCCTGCAGCACCTATCGAGCCTGCAGCGCCTATCGAGAATGCAGCACCTATCGAGCCTACAGCACCTATCGAGCCTGCAGCTTCCATCGAGCCTGCAGCATATTATTCGGTTCCTAATAGGTTTGATTTTCAGTGGAGGCAATTCCCGCAACCTCAAATTCTGCCTGAATTGAGGAGGGAAGTGTTCTCCGAGACAAATGGTCCTACTGCTCTATACGGCAACCCATATGAGGCATTCATTGCTATATGGGATCGCCCAATTATGGAGTACATTGCTGAGGAGACCAACAAATACGCTCAACAGATTGCAGAGGTGATGCTGGTGCAGGGAATTGCTCCCTGCAGCAGAATCACCAAATGGAAGGACACGACAGCGGATGAACTCTACACGTATTTTGCCATAGTCCTGGCAACTGGGATTGTGGTAAAATCACGTTTAGAGGAGTACTGGAATTCGTCGAAAGACATTTTCAGTACGCTTGAGTTCTCCACTGCCATGCCCTTCGATCGCTTCATTCTGTTGAGCAAATGTTTGCATTTTAATGACAATGCTGTATGTAGTCCACAAACAATGTCAATAAGTGAAGCGAAATTGTTCAAAGTGCTGCCTATTGTGCAACATTTGAACAACAAATTCGCTTCACTGTATGTGTTAGGTCGTAATATTGCTCTAGATGAAAGCCTAACCCAGTGGACTGGACGCCTAAATATAAAACAGCATATTCCAAACAAGGCGGCCGCAGTAGGAATTAAAACTTACGAAGTTTGTGAGTCAGATACAGGCTATCTGTGGCGTTTTGAGGTGGAGGCACGTCAGTCCAGTCCAGACGACACAGAGCAAATTAATCCTCTGTCTGGGAAAATTCCCAAGTTAGTGCTCAGACTTCTTGATGGTCTAGAGAACAGAGGGCACACTGTCTGGATGGACAATTATTACAACTCTCCCGCCCTTGCAAGAGAATTAAAATTCCGTGGTTTTGACTGTGTCGGGACCCTGAGAACCGATCGGCAGCTCGTTCCCGCTGAGCTGACGAACCTGCAAGCGAAAGACATGGCCGTTGGTCAGGTATGTGGTTGCACGTCAGGTGATGTTGATCTCATCGTATGGCGTGATAAGAAGCGAATTGCTCTTATCTCGACGTACCATGGGTTGACAACCACGACGTGCGACGACATTGTCAAACCTGCTCTCATACACGATTATAACATCTGTATGGGAGGAGTCGACAAAAAAAACCAGATGCTAGCCATGTACCCCATTGAGAGAAAGCGGACCACGGTATGGTACAAGAAACTTTTTAGGCGCCTCTTGAATGTTAGCGTGTTAAATTCATATATAATGCTTAAGGCAAACCTACACATCAACCACCGAAGCTTTCGCAAATCTTTGGTGGTTGAGTTGTTGGGGCGCCACAACACATATACAAGGCGCACAATAGAAACCGTGCAGTCTAGGCTGCACATTCCACATTTATTCGAAGCCACCCAGACAGGATCACGCCGTCTCAGGCGCAAGTGTGTTGTTTGCTCGAAACGCACAGCGTCCTACTGTGGAATGTGTGACGgGCAATGGCCTGGCCCGTCGTTACGAGGCTCGTCGGCGTGGTCCGAAGAAAGTGTAGCAGCGGCGGTCAACGCTGTGATCAGTGGTCGGATGTCAGCGTATAAAGCTTCTGAACGATATGGCATTCCCAGATCGACCGTCAGAAATCGTGTGGGTCTTGAAAAATTTCGCAAGTCTTTgggaaaaccataa
Protein Sequence: MTTYKASDRYGIPRSTLRNRVRSREFCIVSGEKPATTEIDPENRTQFQAKKIFGHACENAQAHVVLDEVGPLGGVVERREVVVPGKVVVPGKVAVPGMLMPVKMVVFSHVVVFAHEVDHAHVEVAYAHEVVINKLRYAGGIRRPNFSGGPVAVGSDEESDDSDDDANELQPLIVPRVLRPYYNMDGDSDEEGSPALVVDQSWPPTRPASLNPAASIVPAAPIEPAAPIEPAAPIENAAPIEPTAPIEPAASIEPAAYYSVPNRFDFQWRQFPQPQILPELRREVFSETNGPTALYGNPYEAFIAIWDRPIMEYIAEETNKYAQQIAEVMLVQGIAPCSRITKWKDTTADELYTYFAIVLATGIVVKSRLEEYWNSSKDIFSTLEFSTAMPFDRFILLSKCLHFNDNAVCSPQTMSISEAKLFKVLPIVQHLNNKFASLYVLGRNIALDESLTQWTGRLNIKQHIPNKAAAVGIKTYEVCESDTGYLWRFEVEARQSSPDDTEQINPLSGKIPKLVLRLLDGLENRGHTVWMDNYYNSPALARELKFRGFDCVGTLRTDRQLVPAELTNLQAKDMAVGQVCGCTSGDVDLIVWRDKKRIALISTYHGLTTTTCDDIVKPALIHDYNICMGGVDKKNQMLAMYPIERKRTTVWYKKLFRRLLNVSVLNSYIMLKANLHINHRSFRKSLVVELLGRHNTYTRRTIETVQSRLHIPHLFEATQTGSRRLRRKCVVCSKRTASYCGMCDGQWPGPSLRGSSAWSEESVAAAVNAVISGRMSAYKASERYGIPRSTVRNRVGLEKFRKSLGKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -