Basic Information

Insect: Bombyx mori
Gene Symbol: -
Assembly: GCA_027497135.1
Location: CP114947.1:1679579-1692937[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0015 0.086 13.4 2.9 1 23 314 337 314 337 0.96

2 8 2.4 1.4e+02 3.3 5.6 2 20 345 363 344 366 0.91

3 8 0.017 0.96 10.1 0.3 1 23 424 447 424 447 0.90

4 8 0.039 2.2 8.9 0.5 2 20 466 484 465 486 0.93

5 8 0.013 0.75 10.4 4.9 2 23 523 545 522 545 0.93

6 8 0.82 46 4.8 0.1 1 23 557 578 557 581 0.70

7 8 1.2e-06 6.6e-05 23.2 1.0 1 23 584 606 584 606 0.99

8 8 0.00011 0.0059 17.0 2.3 1 23 612 635 612 635 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0015	0.086	13.4	2.9	1	23	314	337	314	337	0.96
2	8	2.4	1.4e+02	3.3	5.6	2	20	345	363	344	366	0.91
3	8	0.017	0.96	10.1	0.3	1	23	424	447	424	447	0.90
4	8	0.039	2.2	8.9	0.5	2	20	466	484	465	486	0.93
5	8	0.013	0.75	10.4	4.9	2	23	523	545	522	545	0.93
6	8	0.82	46	4.8	0.1	1	23	557	578	557	581	0.70
7	8	1.2e-06	6.6e-05	23.2	1.0	1	23	584	606	584	606	0.99
8	8	0.00011	0.0059	17.0	2.3	1	23	612	635	612	635	0.97

Sequence Information

Coding Sequence: ATGCCTGAACTAAAAGTATGCCGGGTATGCCTCAACAAAGATGTTACAATGTATAAATACGATCGATTCCAGTTAAAGTGTTTTTATGAAGAAATTATGGCTGAAAAGATTGACCATCGGGACGGACTACCTCAGTGCTTCTGTTATGAATGTGCCACAATGCTGTATAAATTCCACAAATTTAAGGAGAAATGCAAAATTGGACAGAAAACCCTCAAAGAGATCCTTATCAAAGGAAGTCTTACTTACACATCTGTAAATAGAATAGACAGAGAGAAAAAGAATCTAAAATCTAATCTAGGTATAGTCATCGCAAATGAAAGAGTAAAAACACAGGTAATAAGACACCGAAGTTCAAATTATGAAACAAGGGTTCCGGAAATCGAAAAAATTGAAATTGATTCTCAGAGTGACTATTCAGATGTCCAAGAACGTAACAACTCCGATTATGATATAGATGAAACTGCTGTAGAAGAAGTAGTTGTTGAGGACAAAAAGAATTTAGAGCTTGTGTTCACAGATAATGTAATACCATTACTGAATGAGCAGGAAGACAAGGTTTTCACTGAACCTTTACTAGTTGATGAGAAAGTAGATGATGAACCTATTCAACCTATTGAAGACCCGTCCCTTAAGATAGAAGAAGATAAATTCTCATCTGACGATGAAGTATTAATTAAAATAAAAAAACCTGTCATAGAAAAGAGAGTTACTAGAAAAAAGAAATCAGATTGCATAAAAAATGGGAAAGAAATTAAAAAGAAATTATTTAAGAAGCCAAAGAAGGTAGAAGATATGGAAACGGAGAAATTTAAAGCTGAAACAAAGAGAGCTAATTATTTGAACCCTAAAAACTGGTTAACTGTTTACCTTTCAGAAGAAGAGGCTGAGAAGAGTTTTAAGGCCAAAGCAGAAGATCCCAAGTTCTTGAAGTCTCCTTTTAGATGTTATCAGTGTTATAAAGGGTTTTCAAAACAGGATATGCTGGACAGACACACTAAATTACGTCATTCTGAGACTCTCGGACCAATCGAATGTAAGTTCTGTCACATGCGTTTCAAATGGAAGTGCTTTCTGAACAGACACATGCCCCGACATTACACTATATACAAATGTTTGAGATGTAATTTAACTTGTACGATTGAATCATCTGCAGTATTCCATGAAGATTATCACAATGGTGTAATAAGGAAATGTAAGCATTGGGGGAAGAATTTAGGTGGGCACTCGTCGACGTACTACACGCACCTGCGCACGCACCGCAGCCAGTACCTGTGCACGCTGTGCGGCGTCTCGTTCGTGAGCGAGGCCGGCCTGCATCTGCACAAGCTGGCCAAGCACATCGACGACAAGCCGTCCGCAGGAGGCGCGAAGCAGCAGGGCGAGGTGAACACGTACTGCGAGCGCTGCGACATCAAGTTCGAGACGAAGGAAGCTTTTGAGGAGCATCTTTTTCACTCAGACATGCACTCAGTGGAGCCAGAAGCGATGGCTGAAGACGTACCGGCGCCGGCCTGTCCCAAGGTGCTGAGGCGGAAAGGGACGAGGACGCCCCGGAAGCCGACCACTTGCAGCTACTGCGGCAAGGTGTTCCCGACGCAGGCGGCCTGCATGAAGCACCACCACTCCGAGCATCCCCGGACGCCGTTCTTCCCGAACGAGCCGCGCCACATCTGCGAGATATGCGGCGTCTCGCTGGCTCCGGTGAGCATCCAGTCGCACCTGAACACGCACACGCGCGAGCGCCTGTACACGTGCACCACGTGCGGCGTCGTCTTCAACTCCAAGAGCAGCTGGACGAGGCACCAGCTGACGCACACTGGCGAGAAGCCGTTCGCGTGCTCCTTGTGCGACAAACGCTTCACGCAAAGCAACAGCGTCAAGCTCCACTACAAGACTTTCCACCTCAAGGAACCGTATCCCAAGAGAAACCGTAGGAAGAAAGGGGAAGATGGCGCCCTCCAGGATGACTTCAGAGCGGAGGCCGAATCGGAATCACTAACGCTCGACAGATGGCGCTGA
Protein Sequence: MPELKVCRVCLNKDVTMYKYDRFQLKCFYEEIMAEKIDHRDGLPQCFCYECATMLYKFHKFKEKCKIGQKTLKEILIKGSLTYTSVNRIDREKKNLKSNLGIVIANERVKTQVIRHRSSNYETRVPEIEKIEIDSQSDYSDVQERNNSDYDIDETAVEEVVVEDKKNLELVFTDNVIPLLNEQEDKVFTEPLLVDEKVDDEPIQPIEDPSLKIEEDKFSSDDEVLIKIKKPVIEKRVTRKKKSDCIKNGKEIKKKLFKKPKKVEDMETEKFKAETKRANYLNPKNWLTVYLSEEEAEKSFKAKAEDPKFLKSPFRCYQCYKGFSKQDMLDRHTKLRHSETLGPIECKFCHMRFKWKCFLNRHMPRHYTIYKCLRCNLTCTIESSAVFHEDYHNGVIRKCKHWGKNLGGHSSTYYTHLRTHRSQYLCTLCGVSFVSEAGLHLHKLAKHIDDKPSAGGAKQQGEVNTYCERCDIKFETKEAFEEHLFHSDMHSVEPEAMAEDVPAPACPKVLRRKGTRTPRKPTTCSYCGKVFPTQAACMKHHHSEHPRTPFFPNEPRHICEICGVSLAPVSIQSHLNTHTRERLYTCTTCGVVFNSKSSWTRHQLTHTGEKPFACSLCDKRFTQSNSVKLHYKTFHLKEPYPKRNRRKKGEDGALQDDFRAEAESESLTLDRWR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236216;
90% Identity: iTF_00236216;
80% Identity: -