Basic Information

Insect: Bombyx mori
Gene Symbol: -
Assembly: GCA_027497135.1
Location: CP114956.1:5797441-5802277[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.21 12 6.6 0.3 2 23 94 115 93 115 0.96

2 14 0.074 4.1 8.1 0.9 3 23 197 217 195 217 0.96

3 14 0.015 0.82 10.3 2.0 1 23 225 247 225 247 0.98

4 14 0.093 5.2 7.8 3.1 1 23 283 305 283 305 0.95

5 14 0.00013 0.0074 16.7 4.0 1 23 313 335 313 335 0.99

6 14 0.00084 0.047 14.2 0.9 1 23 417 439 417 439 0.98

7 14 2.3 1.3e+02 3.4 0.7 1 19 493 511 493 515 0.90

8 14 0.39 22 5.8 0.0 2 23 522 543 521 543 0.93

9 14 0.013 0.72 10.4 0.3 1 23 609 631 609 631 0.95

10 14 0.018 0.99 10.0 0.2 1 23 637 659 637 659 0.95

11 14 0.0037 0.21 12.2 2.6 1 23 749 771 749 771 0.97

12 14 9.4e-05 0.0052 17.2 1.4 1 23 777 799 777 799 0.99

13 14 1.4 78 4.1 4.2 1 23 891 913 891 913 0.96

14 14 0.27 15 6.3 4.3 1 23 927 949 927 949 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.21	12	6.6	0.3	2	23	94	115	93	115	0.96
2	14	0.074	4.1	8.1	0.9	3	23	197	217	195	217	0.96
3	14	0.015	0.82	10.3	2.0	1	23	225	247	225	247	0.98
4	14	0.093	5.2	7.8	3.1	1	23	283	305	283	305	0.95
5	14	0.00013	0.0074	16.7	4.0	1	23	313	335	313	335	0.99
6	14	0.00084	0.047	14.2	0.9	1	23	417	439	417	439	0.98
7	14	2.3	1.3e+02	3.4	0.7	1	19	493	511	493	515	0.90
8	14	0.39	22	5.8	0.0	2	23	522	543	521	543	0.93
9	14	0.013	0.72	10.4	0.3	1	23	609	631	609	631	0.95
10	14	0.018	0.99	10.0	0.2	1	23	637	659	637	659	0.95
11	14	0.0037	0.21	12.2	2.6	1	23	749	771	749	771	0.97
12	14	9.4e-05	0.0052	17.2	1.4	1	23	777	799	777	799	0.99
13	14	1.4	78	4.1	4.2	1	23	891	913	891	913	0.96
14	14	0.27	15	6.3	4.3	1	23	927	949	927	949	0.98

Sequence Information

Coding Sequence: ATGACCGATGAAACGGGCAGAAGGAATTACAGCAAGTACACAAAATTCTTAGCCATACCTGTGCCTAATGAAAATGGAAAAACTGAATTTCGCTATCTCGACCCTAACACTTACGTTGACGACACTATGGATGTCGACGACCCCGCCGACGAATTCAACGATACCAACACAATATACGATATGCAACCGTTAAACCTCCAAACTAAGCACTTTGAATTCCAAACATCACTTGAGTCCATCGCAAATCAAGATAAGAAAGTAATAAAAAGGACACTCTGGAAGTGTAAAAAATGCAATTACAAAGATCCATCAAAGGATGCGTTATTAGAGCACGTCCGTGAACACGCTAAGGTGGAAGGTGCGAGTGATGAGGTACGAAATAAGAAACCAGAAAGTTCTATAGATCCGGCAGACTTGGCATATCGTTGTGGGCACTGCCACCAGCTATCGAATTGGAAACACGTAATACAGCGTCACTGTCGCTTGAAGCATAACGGCGTTATAAAAGTCATAACAACGGTCAAACAGAAGCCAGAACTGAACAGTGCCGTTGGATCGTTAACAATCGACGACATCACATCTGACTTTTGTACCAAATGTCCATTCAAATCGAACGACAAACAAGCACTCTTTATTCATTTACAACAACACCAACCGTCAACAAACTCCGTATTTAAGTGCTACTTTTGTCCATTTTTTGTGAAAAACGAAAGTGAATTGATACAACATTTACATGTTCACGGCGTGGAAGATCCAGAAGATTTTATCTCTAAGGCCAGGGGATGCAGATCGCCATTGCCAGACTTAGCCTCTGCCTTAACGCCCCAAGGTGCTTCGACTAAACGACATAGATGTTCAGAATGTCCATATGAGACAAATAGCAAATCGCAGTATATGTATCACGAACAATTTCACCGGTTACCTGCAGATACTCCTTATAAATGCCCTGAATGTAACTATAGCGTTTCGAAACGGCATTTGCTTCATCAGCACTTACGAGTGCATGGAATTCATCCAAAGAAAAATGAGAGCGAAGCGGAACTAGAACTAATGTTAAGGGCCGATGATATTTCCGATGCAGCCTCAAATTCGTTCAATGAAATTCCGTTTGTTTGGGTGTCGGCTAAAAACGAGTTCCACAAAATGTACAAATGTCGTTATTGTTCGTATGTAAATTCGCAAAAATGCAAAATCCCAATACACGAGAAAATTCATTGCCTCGTTTTCGAAAACGACGCATCCGTTTACTACAAATGTTCCGAATGTAAGTTTACTTTTGACAATGCGGTAAAATTGGCCGAGCATTCCAAATCACACGGTGACTTATACGGACGGATTTATTGCCCCGTCGCGGACGACATTCCTGACGATGAACAAGTGGCCAAATTACGTAAGGTCATTGAACTTGAAAAATTGGGAAATAATGATTCGTCGCCCCCTCATGAGGATGGTGAAAGCAAAGAAATCAAAACTTTGTATTTCTGTCAACTGTGTCCTGCACGTTATTTTACGGATACCGAACTACAAGTTCACGATAAAAATCATAATTCAAACCTCTCCGTCAAATGTAAAAACTGCAACTTCGCGGTATCAGAAGAAAGTGAATTGGTTTTACATGCCGTAGTTCATTCTGATGAGTACCACACGAAAACCAGAATGCTTAAATTCGCTCACAATTCTCATCCCGCCCACAGGCCGCCTTGTTTGGAGTCTATTCGCACCGAAAGTGGCGTTGAAATTTGGGTGATCAATCACAATAAAAAAAATGAAATTGTAGAACTAAACAACAAGAAATCCCAAGAAGTCAAACATACACCTAAACAATATAATTGTAAAGAATGTCCCGCCAAATTCTTTAAAGGTTCTGCTCTGAACTACCACATGGGCTTACACGGCGGCGAAGGCGAATATAAATGTAAAAGTTGTAGTTATGCTGTCAAAAACATTGGCAATTTGGCAAAACACGAAGCATTACATGAAAAAGAAAATAAAAATTCCAATGGCGATTATGAATCAGGGGAAGACGCGGATTACAAAAACATTCCAATTTCAGGAACAGACTTATTCCAGAGAAAGACCGAAGCGCAGAAAAGAGTACTCACCGATAAAGATAAATTAGTTAAACCCAACGATCACTTTCCACCCGTGCTTCAAGCCGATCCACAATTTGGATTCTTGATGCATGGTAATCCAGAATTCATATATCCAACTTATCTTAAAAACGGACGTCAGAAAGAAAAACGATACAAATGCCATAAATGTCCGTCTGCGTTTGAAAAAAGGGAACAATATAAAATACATTTATCTTTACATGGCTCAAAACAGAGGTACAAGTGTGAACTTTGCGACTACTCCGTTAAATATTATGCAAATTATGTCCAACACATGCGGAAACATCAAATGAACGATGAAGCACAAGCCGAGAGAAAGAAGGGCGGTTGTGATTTCGTCGAAACTGAAATACAAGATTCAGATAATTTGAAAGGTCCGGAATGTGCGGATAACCTTAAACTGGCAGTCAAAACAATTCCAAAAGGAATGCCTAAAACGGACTTCCAACAATTTTCATATAGAGATCAACAAACACTACGCTTATTACAACGTAGGCGATCAATGTCTTCTATTAACAAAGATGCAAGTGCAACTGAATCTACAAATAAGCGTAAATTGCACTCGTGCCTTCTGTGTCCTTACACTAACCATCGCCAGGACGCTTTAAATAACCATTACAAAAGACATGACGATACGGACCTCGTTAACGTTGCAAATTCGGCAAATCATAAATGTAATTATTGCGATTTGATAGTCCTACAATCACATTTCTTGAAAGAACATTTAAAAACACACTTTAACTATCAGAAAGCGTTGACTCCTGAATGTTTTGTTGCAAGTGAAGACGTCAATTTTACAATCACTAAAATCGACAATGAAAGTCAGCCGTACGATCTCAGATTAGAAATTCAAAATAAGGATTTGACATGCAACACTGATAAAATATTTGTCAACATTAAAACTGGTGAATTATTGGTTTAA
Protein Sequence: MTDETGRRNYSKYTKFLAIPVPNENGKTEFRYLDPNTYVDDTMDVDDPADEFNDTNTIYDMQPLNLQTKHFEFQTSLESIANQDKKVIKRTLWKCKKCNYKDPSKDALLEHVREHAKVEGASDEVRNKKPESSIDPADLAYRCGHCHQLSNWKHVIQRHCRLKHNGVIKVITTVKQKPELNSAVGSLTIDDITSDFCTKCPFKSNDKQALFIHLQQHQPSTNSVFKCYFCPFFVKNESELIQHLHVHGVEDPEDFISKARGCRSPLPDLASALTPQGASTKRHRCSECPYETNSKSQYMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIHPKKNESEAELELMLRADDISDAASNSFNEIPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPIHEKIHCLVFENDASVYYKCSECKFTFDNAVKLAEHSKSHGDLYGRIYCPVADDIPDDEQVAKLRKVIELEKLGNNDSSPPHEDGESKEIKTLYFCQLCPARYFTDTELQVHDKNHNSNLSVKCKNCNFAVSEESELVLHAVVHSDEYHTKTRMLKFAHNSHPAHRPPCLESIRTESGVEIWVINHNKKNEIVELNNKKSQEVKHTPKQYNCKECPAKFFKGSALNYHMGLHGGEGEYKCKSCSYAVKNIGNLAKHEALHEKENKNSNGDYESGEDADYKNIPISGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGFLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKGGCDFVETEIQDSDNLKGPECADNLKLAVKTIPKGMPKTDFQQFSYRDQQTLRLLQRRRSMSSINKDASATESTNKRKLHSCLLCPYTNHRQDALNNHYKRHDDTDLVNVANSANHKCNYCDLIVLQSHFLKEHLKTHFNYQKALTPECFVASEDVNFTITKIDNESQPYDLRLEIQNKDLTCNTDKIFVNIKTGELLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -