Basic Information

Insect: Bombyx mori
Gene Symbol: B0310.2
Assembly: GCA_027497135.1
Location: CP114962.1:874855-891807[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.2 69 4.2 1.5 1 23 367 389 367 389 0.90

2 11 0.25 14 6.4 1.3 1 23 396 419 396 419 0.93

3 11 1.5 81 4.0 0.1 3 23 425 445 423 445 0.90

4 11 5.9 3.3e+02 2.1 4.1 1 23 450 473 450 473 0.95

5 11 0.0018 0.099 13.2 0.7 1 23 477 500 477 500 0.96

6 11 0.075 4.2 8.1 0.7 3 21 514 532 513 537 0.94

7 11 0.089 5 7.8 0.2 2 23 586 608 585 608 0.96

8 11 0.0093 0.52 10.9 0.5 2 20 624 642 623 645 0.92

9 11 2.6e-05 0.0014 18.9 1.9 1 23 651 673 651 673 0.98

10 11 0.00012 0.0066 16.9 2.7 1 23 680 702 680 702 0.98

11 11 8.5e-05 0.0048 17.3 2.9 1 23 708 731 708 731 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.2	69	4.2	1.5	1	23	367	389	367	389	0.90
2	11	0.25	14	6.4	1.3	1	23	396	419	396	419	0.93
3	11	1.5	81	4.0	0.1	3	23	425	445	423	445	0.90
4	11	5.9	3.3e+02	2.1	4.1	1	23	450	473	450	473	0.95
5	11	0.0018	0.099	13.2	0.7	1	23	477	500	477	500	0.96
6	11	0.075	4.2	8.1	0.7	3	21	514	532	513	537	0.94
7	11	0.089	5	7.8	0.2	2	23	586	608	585	608	0.96
8	11	0.0093	0.52	10.9	0.5	2	20	624	642	623	645	0.92
9	11	2.6e-05	0.0014	18.9	1.9	1	23	651	673	651	673	0.98
10	11	0.00012	0.0066	16.9	2.7	1	23	680	702	680	702	0.98
11	11	8.5e-05	0.0048	17.3	2.9	1	23	708	731	708	731	0.94

Sequence Information

Coding Sequence: ATGCGTTGTAGCGTGCCTAATTGTACCACGGACACGAAAGCCGACACGAAAAACTACACAGTCACATTTCACACGTTTCCGAAAAATGAAAGCCACCGTGCCGCCTGGATCGATGCTCTAGGTATGAAGGGCTGGTTGCCCAAAGACGGCAGCGCTATCTGCTCCGAGCACTTCTGGAAGGATGACTTTTATTTCACTAAAGGCGGTCTCAAGAAGGTGAAGAACGGTGCTGTACCTGTGACTCTGAATTCCGAGGCCGATCGCGACGGAGCCGATATATCGGATGTCTGCCGAATATGCTTGAACATTGGTGGCAAACTGTACGACATGGGAGCGTGCAAACTGGAGGAAATATACGAACAACTAACCGAGTACATTTTCACGGATGATGATCGAGTACCGAAGAGGTTGTGCTGGGAGTGCGCCCACAGACTGTCCTCGTGTCTGAAGTTCAAGAGGAAAGCTCTCAGCAGTCAAAAGCTGCTCGCGGACTTAATCGCGGCGAACAAATACGTCACATTAAAAGACGTATTGTGCGTTAATAGAGTTGAGAATGGATTGAGGAGTACGTTGGTACGGAAATCCTTTGAGCCGAACAGCCTGGATTACTTCTTGGACGAGACCTTTAGCGTCGTGAAGCTCAAGGAAGATGAAGCAGGGTCGGATGTGATCTCGGAACCGAACAGAGAAGCCGAGCTGTCCGCGGACAGCGCCGCCGAGGACCTCCACATCAAAGACGAGGCCTCGAACGAGATATTCTTCGAAGAGTACAACGTCGGCTTCTACGACTCCGACGATGATAAGGTTCTGAGCGAAGTGTATAAGGACGAGAAGGTGGCGAACTGTGACAGCAAAGAGACGTCGTCTAAAGTGAAAAAGGGGAGGAAGAGATTGAAGGTCCAGAAGAAGGGGGTCAGGAAGAGAGCCGGAGACGACAATCCCGACAACGTCactaagcgattcaaaatGGCGGACGTGAAACGCCGCCGAACCCAAGACCTGGACGAGAATCTGTTCACGATAACTTCGCTCACGTACGAGGAGCAGATAGCGGAGATAGAGAAGAGGCAGGAGCTGAACAGCTACAAGAGCGCCCCGTACAAGTGCACCACGTGCTACAGGGGCTTCCTCAACAGGGAGAGGTTCGAGGCGCACTCCGTGAGGCACAGCGACGTGAGTGGCGTCTTCGAATGCTTCATATGTAAATCCAGAATGAAATCCAGCCGCGCTCTACGCAAACACCTCACCGGACAGCATACAGAGAAAATTATATGCAAAGGGTGTCCTTTCACAACGAGGAACAGGGGCGTGGCCAGAGAACACGAAAAATGGCACGCTGGTACTAAATACCAGTGCCCGCATTGCTGTAGTGAATTCGATAAACTGACCACATACATGGGCCACTTGAGGATCAAGCACGTGTGCGACTTCGTGTGCGAGCTTTGCGGCTACACGTTCGTCAGCAAGAAGGGGGTCGACGTTCACAAGAAGAAGAAGCACAGGCTCGCCGACAAGCCGGATCTGCTCGAAGGACCATTCTGTGAGCTATGCGAGGTCAAATTCAAGACTCAAATGGCCTACGATCGACACTTGAGGTTGTCGTCGAGACACAGCAAAGACAGCGATCCGAATCGCTTAAGGAACGATTCTCAGAGCGTCTCGCAGCGCAGCGACCGCGTCGTGCGCCGCATAGAGAGACGCCCCGTCATCCACGGGCGGGACGCGGGGGCGGAGCGCGGGGCGGCCGGGCCCGTCACGTGCGAGCAGTGTGGCATAGAGCTGAAGGACCTGAGGCTGTACTCGCAGCACTTCAGACGAGCCCACCCGGATAAGAACAGGACCAAGTACCCGGCCATGAAGACGCCCTGCATGTGTGAGCAGTGCGGGAGGATATTCCAAAGCATGGCGCTGCTGAAAGACCACATGTGGGTCCACACCGGCGAGAAACGCTTCAAATGCGACCGCTGCCCGAAGAGCTTCACCCAGAAGACGAACCTGGTGTTCCACCTGCGCGTGCACAGCGCCACCCGACCCTCGTACGAGTGCCCCCTGTGCGGGAAACATTTCGCCTTCTATAACAACAGGAGGCGTCATATGTTCATCCACACTGGCCTGAAGCCGTACAAATGCGACACGTGCCTCAAGTGCTTCACAACGTCCGGCGAGCTGCGCGCGCACGTCGAGCACGTGCACATGAAGAAGCCGTGGCCGAAGCGCGCGCGTACCAACAGACAGAGCGACGCGCTCGCCGACTAG
Protein Sequence: MRCSVPNCTTDTKADTKNYTVTFHTFPKNESHRAAWIDALGMKGWLPKDGSAICSEHFWKDDFYFTKGGLKKVKNGAVPVTLNSEADRDGADISDVCRICLNIGGKLYDMGACKLEEIYEQLTEYIFTDDDRVPKRLCWECAHRLSSCLKFKRKALSSQKLLADLIAANKYVTLKDVLCVNRVENGLRSTLVRKSFEPNSLDYFLDETFSVVKLKEDEAGSDVISEPNREAELSADSAAEDLHIKDEASNEIFFEEYNVGFYDSDDDKVLSEVYKDEKVANCDSKETSSKVKKGRKRLKVQKKGVRKRAGDDNPDNVTKRFKMADVKRRRTQDLDENLFTITSLTYEEQIAEIEKRQELNSYKSAPYKCTTCYRGFLNRERFEAHSVRHSDVSGVFECFICKSRMKSSRALRKHLTGQHTEKIICKGCPFTTRNRGVAREHEKWHAGTKYQCPHCCSEFDKLTTYMGHLRIKHVCDFVCELCGYTFVSKKGVDVHKKKKHRLADKPDLLEGPFCELCEVKFKTQMAYDRHLRLSSRHSKDSDPNRLRNDSQSVSQRSDRVVRRIERRPVIHGRDAGAERGAAGPVTCEQCGIELKDLRLYSQHFRRAHPDKNRTKYPAMKTPCMCEQCGRIFQSMALLKDHMWVHTGEKRFKCDRCPKSFTQKTNLVFHLRVHSATRPSYECPLCGKHFAFYNNRRRHMFIHTGLKPYKCDTCLKCFTTSGELRAHVEHVHMKKPWPKRARTNRQSDALAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00235922;
90% Identity: iTF_00235922;
80% Identity: iTF_00236690;